View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13536_high_4 (Length: 326)
Name: NF13536_high_4
Description: NF13536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13536_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 35980776 - 35980588
Alignment:
| Q |
19 |
catcaaccatacaataaagcttgttaaggagtatagtactcatgtgtaagtgcattactgggcaatgacttttttggcagtagttcacttgatcattcag |
118 |
Q |
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| T |
35980776 |
catcaaccaatcaataaagcttgttaaggagtatagtactcatgtgtaagtgcattactgggcaatgacttttttggcagtagttcacttgatctttcag |
35980677 |
T |
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| Q |
119 |
atgatgcaaacaaactcactgccaaagaagatttgccccgcaattcactcttgtgcacattcatatactttatcaagaagaaattaagg |
207 |
Q |
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| T |
35980676 |
atgatgcaaacaaactcactgccaaagaagatttgccccgcaattcactcttgtgcacattcatatactttatcaagaagaaattaagg |
35980588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 35991494 - 35991381
Alignment:
| Q |
55 |
tactcatgtgtaagtgcattactgggcaatgacttttttggcagtagttcacttgatcattcagatgatgcaaacaaactcactgccaaagaagatttgc |
154 |
Q |
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| T |
35991494 |
tactcatgtgtaggtgcattactgggcaatgacttctttggcagtagttgacttgatcattcagatgatgcaaacaaactcaccgccaaagaagatttgc |
35991395 |
T |
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| Q |
155 |
cccgcaattcactc |
168 |
Q |
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| T |
35991394 |
cccgcaattcactc |
35991381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 224 - 311
Target Start/End: Complemental strand, 35980538 - 35980451
Alignment:
| Q |
224 |
gtatagtggccatgtaacatgtccatagaggcgcgcagacacataatgaatgaaagcgtgataatttctcaatccgttcctctatatt |
311 |
Q |
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| T |
35980538 |
gtatagtggccatgtaacatgtccatagaggcgcgcagacacataatgaatgaaagcatgataatttctcaatccgttcctctatatt |
35980451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Original strand, 4985015 - 4985047
Alignment:
| Q |
138 |
tgccaaagaagatttgccccgcaattcactctt |
170 |
Q |
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| T |
4985015 |
tgccaaagaagattttccccgcaattcactctt |
4985047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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