View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13536_low_2 (Length: 631)

Name: NF13536_low_2
Description: NF13536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13536_low_2
NF13536_low_2
[»] chr2 (6 HSPs)
chr2 (181-442)||(34133205-34133470)
chr2 (9-145)||(34133506-34133642)
chr2 (512-612)||(34133035-34133135)
chr2 (67-109)||(31145484-31145526)
chr2 (61-93)||(19110472-19110504)
chr2 (42-106)||(39665222-39665286)
[»] chr3 (4 HSPs)
chr3 (9-100)||(19659142-19659234)
chr3 (15-86)||(19631302-19631374)
chr3 (9-93)||(5348130-5348215)
chr3 (74-106)||(41662412-41662444)
[»] chr8 (6 HSPs)
chr8 (14-106)||(24625617-24625710)
chr8 (42-107)||(23543212-23543277)
chr8 (8-82)||(25281802-25281877)
chr8 (49-93)||(15887089-15887133)
chr8 (75-111)||(15934081-15934117)
chr8 (9-98)||(23539657-23539747)
[»] chr4 (4 HSPs)
chr4 (44-93)||(21982741-21982790)
chr4 (42-106)||(16684898-16684962)
chr4 (44-106)||(28801581-28801643)
chr4 (72-106)||(47534396-47534430)
[»] scaffold0228 (3 HSPs)
scaffold0228 (9-98)||(6316-6406)
scaffold0228 (9-98)||(13898-13988)
scaffold0228 (9-98)||(23850-23940)
[»] scaffold0186 (1 HSPs)
scaffold0186 (14-92)||(19818-19897)
[»] chr7 (5 HSPs)
chr7 (39-106)||(11773279-11773346)
chr7 (42-100)||(17160102-17160159)
chr7 (8-93)||(29740554-29740639)
chr7 (42-98)||(16197711-16197767)
chr7 (74-106)||(19070723-19070755)
[»] chr5 (2 HSPs)
chr5 (47-106)||(22446816-22446875)
chr5 (44-94)||(18223374-18223424)
[»] chr6 (6 HSPs)
chr6 (39-113)||(14355806-14355880)
chr6 (14-93)||(14565893-14565973)
chr6 (9-98)||(16896789-16896879)
chr6 (14-107)||(13310652-13310745)
chr6 (14-86)||(18027839-18027912)
chr6 (14-94)||(18558143-18558224)
[»] chr1 (2 HSPs)
chr1 (14-93)||(23475187-23475267)
chr1 (44-96)||(21424053-21424105)
[»] scaffold0111 (1 HSPs)
scaffold0111 (14-98)||(25292-25377)
[»] scaffold0007 (1 HSPs)
scaffold0007 (50-100)||(204092-204142)
[»] scaffold0022 (1 HSPs)
scaffold0022 (62-106)||(110426-110470)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 181 - 442
Target Start/End: Complemental strand, 34133470 - 34133205
Alignment:
Q  181 attttctttcaagacttaattcttttttcaattctaaggtactgaaatgatcaacaaggggttgagttaagaatccttgaaacatggagaggcaaagtga 280  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34133470 attttctttcaaaacttaattcttttttcaattctaaggtactgaaatgatcaacaaggggttgagttaagaatccttgaaacatggagaggcaaagtga 34133371  T
Q  281 agaataccca----atcctcaaaaggcagagttaagagtacttgaattcattcgaatgaaaaattaaaagtttctcttagaaggggagaattattaatat 376  Q
    ||||||||||    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  34133370 agaatacccacccaatcctgaaaaggcagagttaagagtacttgaattcattcgaatgaaaaattaaaagtttctcttagaaggggagaactactaatat 34133271  T
Q  377 aaaaatttgtgtgttttctctttactttaaatggtctttatgtcttttcttcaaatgactttaatc 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34133270 aaaaatttgtgtgttttctctttactttaaatggtctttatgtcttttcttcaaatgactttaatc 34133205  T

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Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 9 - 145
Target Start/End: Complemental strand, 34133642 - 34133506
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattacatt 108  Q
    |||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  34133642 cgaataaaatacacaaatagacaattaatgcacataaacacatataagcacgcataacaaataattaaaataattctaacgaaaatcgggctattacatt 34133543  T
Q  109 aagctcgtgtaaactcgaccgagtttacgagtttaca 145  Q
    || ||||||||||||||||||||||||||| ||||||    
T  34133542 aaactcgtgtaaactcgaccgagtttacgaatttaca 34133506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 512 - 612
Target Start/End: Complemental strand, 34133135 - 34133035
Alignment:
Q  512 acaattcaaagtccctcctccttgtgtttttaaaaattaatctgaaaatattgatgtcacacagtcgatcgatgttttcaataataaaagaagatgaata 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34133135 acaattcaaagtccctcctccttgtgtttttaaaaattaatctgaaaatatggatgtcacacagtcgatcgatgttttcaataataaaagaagatgaata 34133036  T
Q  612 c 612  Q
    |    
T  34133035 c 34133035  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 67 - 109
Target Start/End: Complemental strand, 31145526 - 31145484
Alignment:
Q  67 aaataaataaaataattctaacgaaaatcgggctattacatta 109  Q
    |||||| |||||||| |||||||||||||||||| ||||||||    
T  31145526 aaataattaaaataaatctaacgaaaatcgggctgttacatta 31145484  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 93
Target Start/End: Complemental strand, 19110504 - 19110472
Alignment:
Q  61 cataacaaataaataaaataattctaacgaaaa 93  Q
    ||||| |||||||||||||||||||||||||||    
T  19110504 cataataaataaataaaataattctaacgaaaa 19110472  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 39665286 - 39665222
Alignment:
Q  42 ataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    |||| |||| |||| ||| ||||| |||||||||||||||| ||||||||||   ||||||||||    
T  39665286 ataaacacagataaacacacataataaataaataaaataatcctaacgaaaaataggctattaca 39665222  T

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Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 19659234 - 19659142
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatg-cacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggct 100  Q
    |||| |||||||||||||||| |||||||  |||| |||||||||||| ||| ||||| |||||| ||||||||||||| |||||| ||||||    
T  19659234 cgaataaaatacacacatagacaattaatcacacaaaagcacatataaacacacataataaataattaaaataattctagcgaaaaacgggct 19659142  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 19631374 - 19631302
Alignment:
Q  15 aaatacacacatagaaaattaatg-cacataagcacatataagcacgcataacaaataaataaaataattcta 86  Q
    ||||||||||| ||| |||||||  |||| |||||||||||| ||| ||||| |||||||||||| |||||||    
T  19631374 aaatacacacagagacaattaatcacacacaagcacatataaacacacataataaataaataaaacaattcta 19631302  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 93
Target Start/End: Original strand, 5348130 - 5348215
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaa 93  Q
    |||| |||||||||||||||| ||||||| || |||  || |||||||| ||| ||||| |||||| ||||||||||||| ||||||    
T  5348130 cgaataaaatacacacatagacaattaat-catatacaagtacatataaacacacataataaataattaaaataattctagcgaaaa 5348215  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 41662412 - 41662444
Alignment:
Q  74 taaaataattctaacgaaaatcgggctattaca 106  Q
    ||||||||||||| |||||||||||||||||||    
T  41662412 taaaataattctagcgaaaatcgggctattaca 41662444  T

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Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 106
Target Start/End: Original strand, 24625617 - 24625710
Alignment:
Q  14 aaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    |||||||||||| ||| || |||| ||||||  ||||||||||| |||  |||| |||||||||||||||||||| |||||||||||||||||||    
T  24625617 aaaatacacacagagacaaataat-cacatacaagcacatataaacacatataataaataaataaaataattctagcgaaaatcgggctattaca 24625710  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 107
Target Start/End: Original strand, 23543212 - 23543277
Alignment:
Q  42 ataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattacat 107  Q
    |||||||||||||| ||| ||||| |||||| ||||||||||||| | |||| |||| | ||||||    
T  23543212 ataagcacatataaacacacataataaataattaaaataattctagcaaaaaacgggttgttacat 23543277  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 25281802 - 25281877
Alignment:
Q  8 tcgaagaaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataat 82  Q
    ||||| |||||||||||| ||| ||||||| ||||||  ||||||||||| ||| ||||| |||||| |||||||||    
T  25281802 tcgaataaaatacacacaaagacaattaat-cacatacaagcacatataaacacacataataaataattaaaataat 25281877  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 15887089 - 15887133
Alignment:
Q  49 catataagcacgcataacaaataaataaaataattctaacgaaaa 93  Q
    ||||||| ||||||||| |||||| |||||||||||| |||||||    
T  15887089 catataaacacgcataataaataattaaaataattctgacgaaaa 15887133  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 15934081 - 15934117
Alignment:
Q  75 aaaataattctaacgaaaatcgggctattacattaag 111  Q
    ||||||| |||| ||||||||||||||||||||||||    
T  15934081 aaaataaatctagcgaaaatcgggctattacattaag 15934117  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 23539747 - 23539657
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacat--aagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||| |||||||||||||||| || |||| |||||  |||| ||||||| ||| ||||| |||||| |||||||||| || |||||| ||||    
T  23539747 cgaataaaatacacacatagataaataat-cacatacaagcgcatataaacacacataataaataattaaaataattatagcgaaaaacggg 23539657  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 21982741 - 21982790
Alignment:
Q  44 aagcacatataagcacgcataacaaataaataaaataattctaacgaaaa 93  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  21982741 aagcacatataagcacacataataaataaataaaataattctaacgaaaa 21982790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 16684898 - 16684962
Alignment:
Q  42 ataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    |||||||||||||| |||  | ||||||||||||||||||||||| |||||| ||||||||||||    
T  16684898 ataagcacatataaacacataaaacaaataaataaaataattctagcgaaaaacgggctattaca 16684962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 28801581 - 28801643
Alignment:
Q  44 aagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    |||||||||||| ||| ||||| || ||| ||||||||||||| |||||||||| || |||||    
T  28801581 aagcacatataaacacacataataattaattaaaataattctagcgaaaatcggactgttaca 28801643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 47534430 - 47534396
Alignment:
Q  72 aataaaataattctaacgaaaatcgggctattaca 106  Q
    ||||||||||||||||||||||||||||| |||||    
T  47534430 aataaaataattctaacgaaaatcgggctgttaca 47534396  T

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Target: scaffold0228 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 6406 - 6316
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||| |||||||||||| ||| || |||| ||||||  ||||||||||| ||| ||||| |||||| ||||||||||||| |||||||||||    
T  6406 cgaataaaatacacacagagacaaataat-cacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcggg 6316  T

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Target: scaffold0228; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 13988 - 13898
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||| |||||||||||| ||| || |||| ||||||  ||||||||||| ||| ||||| |||||| ||||||||||||| |||||||||||    
T  13988 cgaataaaatacacacagagacaaataat-cacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcggg 13898  T

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Target: scaffold0228; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 98
Target Start/End: Complemental strand, 23940 - 23850
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||| |||||||||||| ||| || |||| ||||||  ||||||||||| ||| ||||| |||||| ||||||||||||| |||||||||||    
T  23940 cgaataaaatacacacagagacaaataat-cacatacaagcacatataaacacacataataaataattaaaataattctagcgaaaatcggg 23850  T

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Target: scaffold0186 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 19818 - 19897
Alignment:
Q  14 aaaatacacacatagaaaattaatg-cacataagcacatataagcacgcataacaaataaataaaataattctaacgaaa 92  Q
    ||||||||||||| || |||||||  ||||||| ||||||||| |||  |||| |||||| |||||||||||||||||||    
T  19818 aaaatacacacatggacaattaatcacacataaacacatataaacacatataataaataattaaaataattctaacgaaa 19897  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 11773346 - 11773279
Alignment:
Q  39 cacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    |||| |||||||||||| ||| ||||| |||||| |||||||||| ||||||||| |||||| |||||    
T  11773346 cacacaagcacatataaacacacataataaataattaaaataattttaacgaaaaacgggcttttaca 11773279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 17160159 - 17160102
Alignment:
Q  42 ataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggct 100  Q
    ||||||||||| || ||| ||||| ||||||||||||||||||||||||||| ||||||    
T  17160159 ataagcacatacaaacacacataa-aaataaataaaataattctaacgaaaaacgggct 17160102  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 29740639 - 29740554
Alignment:
Q  8 tcgaagaaaatacacacatagaaaattaatgcacataag-cacatataagcacgcataacaaataaataaaataattctaacgaaaa 93  Q
    ||||| |||||||||||||||| || |||| |||||||  ||||||||||||| ||||| | | || ||||||||||||||||||||    
T  29740639 tcgaataaaatacacacatagacaaataat-cacataaaacacatataagcacacataatagacaattaaaataattctaacgaaaa 29740554  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 16197711 - 16197767
Alignment:
Q  42 ataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||| ||||||||| |||  |||| |||||| |||||||||||||||||||| ||||    
T  16197711 ataatcacatataaacacatataataaataattaaaataattctaacgaaaaacggg 16197767  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 106
Target Start/End: Original strand, 19070723 - 19070755
Alignment:
Q  74 taaaataattctaacgaaaatcgggctattaca 106  Q
    |||||||| ||||||||||||||||||||||||    
T  19070723 taaaataaatctaacgaaaatcgggctattaca 19070755  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 47 - 106
Target Start/End: Original strand, 22446816 - 22446875
Alignment:
Q  47 cacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    ||||||||| ||| ||||| || ||||||||||||||||| ||||||||||||| |||||    
T  22446816 cacatataaacacacataataattaaataaaataattctagcgaaaatcgggctgttaca 22446875  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 18223424 - 18223374
Alignment:
Q  44 aagcacatataagcacgcataacaaataaataaaataattctaacgaaaat 94  Q
    |||||||||||| ||| ||||| |||||| ||||||||||||| |||||||    
T  18223424 aagcacatataaacacacataataaataattaaaataattctagcgaaaat 18223374  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 113
Target Start/End: Original strand, 14355806 - 14355880
Alignment:
Q  39 cacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattacattaagct 113  Q
    |||| |||||||||||| ||| ||||| |||||| |||||||||| || ||||||||| ||| ||||| ||||||    
T  14355806 cacacaagcacatataaacacacataataaataattaaaataattttagcgaaaatcgagctgttacaataagct 14355880  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 14565973 - 14565893
Alignment:
Q  14 aaaatacacacatagaaaattaatg-cacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaa 93  Q
    |||||||||||| ||| |||||||  |||||||  |||||||| ||| ||||| |||||| |||||||| |||||||||||    
T  14565973 aaaatacacacaaagacaattaatcacacataaaaacatataaacacacataataaataattaaaataaatctaacgaaaa 14565893  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 98
Target Start/End: Original strand, 16896789 - 16896879
Alignment:
Q  9 cgaagaaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||| |||||||||||| ||| |||| || ||||||  ||||||||||| ||| ||||| |||||| ||||||||||||||| |||| ||||    
T  16896789 cgaataaaatacacacagagacaattcat-cacatacaagcacatataaacacacataataaataattaaaataattctaacaaaaaacggg 16896879  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 13310652 - 13310745
Alignment:
Q  14 aaaatacacacatagaaaattaatg-cacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcgggctattacat 107  Q
    |||||||||||| ||| |||||||  || | ||||||| ||||  || ||||| |||||| |||||||| |||| ||||||||||||||||||||    
T  13310652 aaaatacacacaaagacaattaattacatagaagcacacataaatacacataataaataa-taaaataaatctagcgaaaatcgggctattacat 13310745  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 86
Target Start/End: Complemental strand, 18027912 - 18027839
Alignment:
Q  14 aaaatacacacatagaaaattaatg-cacataagcacatataagcacgcataacaaataaataaaataattcta 86  Q
    |||||||||||| ||| || ||||  |||| |||||||||||| ||| ||||| |||||| |||||||||||||    
T  18027912 aaaatacacacagagataaataatcacacacaagcacatataaacacacataataaataattaaaataattcta 18027839  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 18558143 - 18558224
Alignment:
Q  14 aaaatacacacataga-aaattaatgcacataagcacatataagcacgcataacaaataaataaaataattctaacgaaaat 94  Q
    |||||||||||||||| |||| ||  || | |||||||||||| ||  ||||| || ||| |||||||||||||||||||||    
T  18558143 aaaatacacacatagacaaataaacacatacaagcacatataaacatacataataattaattaaaataattctaacgaaaat 18558224  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 93
Target Start/End: Complemental strand, 23475267 - 23475187
Alignment:
Q  14 aaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaa 93  Q
    |||||||||||| ||| ||||||| ||||||  ||||||||||| ||| ||||| |||||| ||||||||||||| ||||||    
T  23475267 aaaatacacacagagacaattaat-cacatacaagcacatataatcacacataataaataattaaaataattctagcgaaaa 23475187  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 44 - 96
Target Start/End: Original strand, 21424053 - 21424105
Alignment:
Q  44 aagcacatataagcacgcataacaaataaataaaataattctaacgaaaatcg 96  Q
    |||||||||||| ||| ||||| || ||| ||||||||||||| |||||||||    
T  21424053 aagcacatataaacacacataataattaattaaaataattctagcgaaaatcg 21424105  T

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Target: scaffold0111 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 98
Target Start/End: Original strand, 25292 - 25377
Alignment:
Q  14 aaaatacacacatagaaaattaatgcacata--agcacatataagcacgcataacaaataaataaaataattctaacgaaaatcggg 98  Q
    |||||||||||| ||| ||||||| ||||||  |||||||||||  || ||||| |||||| |||||||||||||  ||||||||||    
T  25292 aaaatacacacacagacaattaat-cacatacaagcacatataaaaacacataataaataattaaaataattctagtgaaaatcggg 25377  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 204142 - 204092
Alignment:
Q  50 atataagcacgcataacaaataaataaaataattctaacgaaaatcgggct 100  Q
    |||||| ||| ||||| |||||| |||||||||||||||||||| ||||||    
T  204142 atataaacacacataataaataattaaaataattctaacgaaaaacgggct 204092  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 106
Target Start/End: Original strand, 110426 - 110470
Alignment:
Q  62 ataacaaataaataaaataattctaacgaaaatcgggctattaca 106  Q
    |||| |||||| |||||||| |||||||||||||||||| |||||    
T  110426 ataaaaaataattaaaataaatctaacgaaaatcgggctgttaca 110470  T

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