View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13536_low_6 (Length: 250)
Name: NF13536_low_6
Description: NF13536
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13536_low_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 9646624 - 9646379
Alignment:
| Q |
5 |
tgtcgaagaatatgtgtccgatacgtatttgcaactgatacatgtttgatacaatttgatgggtattggagaagattttccaattaaagttttttagcta |
104 |
Q |
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| T |
9646624 |
tgtcaaagtatatgtgtccgatacgtatttgcaactgatacatgtttgatacaatttgacgcgtattggagaagattttccaattaaagttttttagcta |
9646525 |
T |
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| Q |
105 |
gggttcgccattttgtcggttcgttaactcttaagtagtgaatattagacaattttttggagaccattcttttgtatagtactaatttctttttgcaata |
204 |
Q |
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| T |
9646524 |
gggttcgccattttgtcggttcgttaactcttaagtagtgaatattagacaagtttttggagaccattcttttgtatagtactaatttctttttgcaata |
9646425 |
T |
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| Q |
205 |
ttctcgttgttcccgaaacatatacaaatgtcaattgcttttataa |
250 |
Q |
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| T |
9646424 |
ttctcgttgttccggaaacatatacaaatgtcaattgcttttataa |
9646379 |
T |
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