View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13537_low_3 (Length: 215)

Name: NF13537_low_3
Description: NF13537
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13537_low_3
NF13537_low_3
[»] chr6 (3 HSPs)
chr6 (17-197)||(26857755-26857929)
chr6 (71-193)||(25050846-25050972)
chr6 (82-191)||(30488430-30488541)
[»] chr5 (4 HSPs)
chr5 (78-193)||(4897423-4897538)
chr5 (112-195)||(6742457-6742541)
chr5 (78-193)||(21637257-21637375)
chr5 (126-195)||(33689905-33689975)
[»] chr1 (2 HSPs)
chr1 (71-193)||(1284814-1284937)
chr1 (121-193)||(33072773-33072845)
[»] scaffold0245 (2 HSPs)
scaffold0245 (121-193)||(11132-11204)
scaffold0245 (71-193)||(9459-9582)
[»] chr4 (3 HSPs)
chr4 (78-193)||(10032679-10032795)
chr4 (73-197)||(42664918-42665044)
chr4 (78-160)||(8818777-8818859)
[»] scaffold0229 (1 HSPs)
scaffold0229 (71-193)||(9787-9910)
[»] chr3 (4 HSPs)
chr3 (80-193)||(548088-548201)
chr3 (81-193)||(25836364-25836478)
chr3 (80-192)||(26667113-26667227)
chr3 (121-192)||(9032830-9032902)
[»] chr2 (2 HSPs)
chr2 (84-195)||(14007624-14007741)
chr2 (78-160)||(20957431-20957514)
[»] scaffold0160 (1 HSPs)
scaffold0160 (72-157)||(28397-28483)
[»] chr7 (1 HSPs)
chr7 (78-193)||(29598097-29598214)


Alignment Details
Target: chr6 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 26857755 - 26857929
Alignment:
Q  17 cataggtactgctcatatcctgatattttgaaacttgatttgcgattctacgaaatttatcagagtatagtgaataagccatagttagatgatggtaaat 116  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||      ||||||||||||||||||||||||||||||||||||    
T  26857755 cataggtactgctcatatcctgatcttttgaaacttgatgtgcgattctacggagttt------gtatagtgaataagccatagttagatgatggtaaat 26857848  T
Q  117 tagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatatctctcactattgtactatct 197  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||  || ||||||||    
T  26857849 tagagttaattggttggttaggtagttaagagttagttagactaacttaccttgtaaatatctctcacctttctactatct 26857929  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 25050846 - 25050972
Alignment:
Q  71 atttatcagagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagtt---agactagcttac 166  Q
    |||||| |||||||||||||||| |||||||||||| ||  ||||| ||  |||||||  ||||||||||||| |||||||||||   |||||| || ||    
T  25050846 atttattagagtatagtgaataaaccatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttaggagactaactcac 25050945  T
Q  167 cttataaatatctctcactattgtact 193  Q
      ||||||||| | |||||||||||||    
T  25050946 tctataaatatatttcactattgtact 25050972  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 191
Target Start/End: Original strand, 30488430 - 30488541
Alignment:
Q  82 tatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatatct 179  Q
    |||||||||||| |||||||||| | ||  ||||||||  ||| ||||||||||||| |||| || |||||||||||||| || | || |||||||| ||    
T  30488430 tatagtgaataaaccatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagct 30488529  T
Q  180 ctcactattgta 191  Q
    ||||| ||||||    
T  30488530 ctcaccattgta 30488541  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 4897538 - 4897423
Alignment:
Q  78 agagtatagtgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatat 177  Q
    |||||||||||||||| |||||||||||| |||||||| ||  |||||||||||| ||||||||| ||||||||||||||||| || ||| ||||||||     
T  4897538 agagtatagtgaataaaccatagttagataatggtaaactatggttagttggttgattaggtagttaagagttagttagactaactcaccctataaataa 4897439  T
Q  178 ctctcactattgtact 193  Q
    |||||| |||||||||    
T  4897438 ctctcaatattgtact 4897423  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 6742457 - 6742541
Alignment:
Q  112 taaattagagttagttggttggttaggtagtgaagagttagttagactagcttacct-tataaatatctctcactattgtactat 195  Q
    |||||||  |||||||||||||||||||| | |||||||||||| ||||  |||| | |||||||| ||||||||||||||||||    
T  6742457 taaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataactctcactattgtactat 6742541  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 21637375 - 21637257
Alignment:
Q  78 agagtatagtgaataagccatagttagatgatggta-aattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaat 175  Q
    |||||||||||||||| |||||||||| | ||   | || || ||||||||||||||||||||||| | |||||||||| |||| || | ||||||||||    
T  21637375 agagtatagtgaataaaccatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcacccttataaat 21637276  T
Q  176 atctctc-actattgtact 193  Q
    | || || |||||||||||    
T  21637275 aactttcgactattgtact 21637257  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 33689905 - 33689975
Alignment:
Q  126 ttggttggttaggtagtgaagagttagttagactagcttacc-ttataaatatctctcactattgtactat 195  Q
    |||||| |||||||||| |||||| | |||||||| ||| || ||||||||| ||||||||||||||||||    
T  33689905 ttggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactattgtactat 33689975  T

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Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 1284814 - 1284937
Alignment:
Q  71 atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttacctt 169  Q
    |||||| ||||||||  |||||| |||||||||| |||   ||||| ||  |||||||||||||||||||||| ||||||||||||||||| || ||| |    
T  1284814 atttattagagtatatagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactcaccct 1284913  T
Q  170 ataaatatctctcactattgtact 193  Q
    ||||||| || |||||||||||||    
T  1284914 ataaataactatcactattgtact 1284937  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 33072773 - 33072845
Alignment:
Q  121 gttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatatctctcactattgtact 193  Q
    |||||||||||||||||||||| ||||||||||||| ||  || | ||||||||||| ||||||||||||||||    
T  33072773 gttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtact 33072845  T

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Target: scaffold0245 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 121 - 193
Target Start/End: Original strand, 11132 - 11204
Alignment:
Q  121 gttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatatctctcactattgtact 193  Q
    |||||||||||||||||||||| ||||||||||||||||| || ||| |||||||| || |||||||||||||    
T  11132 gttagttggttggttaggtagttaagagttagttagactaactcaccctataaataactatcactattgtact 11204  T

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Target: scaffold0245; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 9459 - 9582
Alignment:
Q  71 atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttacctt 169  Q
    |||||| ||||||||  |||||| |||||||||| |||   ||||| ||  |||||||||||||||||||||| ||| ||||||||||||| || ||| |    
T  9459 atttattagagtatatagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactcaccct 9558  T
Q  170 ataaatatctctcactattgtact 193  Q
    ||||||| || |||||||||||||    
T  9559 ataaataactatcactattgtact 9582  T

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Target: chr4 (Bit Score: 49; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 10032795 - 10032679
Alignment:
Q  78 agagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaata 176  Q
    ||||||||| |||||| |||||||||| |||   ||||| ||  |||||||||||||||||||||| ||||||  ||||||||| || ||| ||||||||    
T  10032795 agagtatagagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactcaccctataaata 10032696  T
Q  177 tctctcactattgtact 193  Q
     ||||||||||||||||    
T  10032695 actctcactattgtact 10032679  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 42664918 - 42665044
Alignment:
Q  73 ttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-cctta 170  Q
    |||| |||||||| ||||||| |||||||||| | ||  ||||| ||  |||||||||||| ||||||||| ||||||||||||||||| || | |||||    
T  42664918 ttattagagtataatgaataaaccatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcaccctta 42665017  T
Q  171 taaatatctctcactattgtactatct 197  Q
    ||||||  |||||| ||||||||||||    
T  42665018 taaatagttctcacaattgtactatct 42665044  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Complemental strand, 8818859 - 8818777
Alignment:
Q  78 agagtatagtgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagacta 160  Q
    ||||||||||||||||  ||| ||||| | || ||||| ||||||| ||| |||||||| ||||| || | ||||||||||||    
T  8818859 agagtatagtgaataaatcatggttagttaatagtaaactagagtttgtttgttggttaagtagttaaaaattagttagacta 8818777  T

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Target: scaffold0229 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 193
Target Start/End: Original strand, 9787 - 9910
Alignment:
Q  71 atttatcagagtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttacctt 169  Q
    |||||| ||||||||  |||||| |||||||||| |||   ||||| ||  |||||||||||||||||||||| ||| ||||||||||||| || ||| |    
T  9787 atttattagagtatatagaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactcaccct 9886  T
Q  170 ataaatatctctcactattgtact 193  Q
    ||||||| || |||||||||||||    
T  9887 ataaataactatcactattgtact 9910  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 80 - 193
Target Start/End: Original strand, 548088 - 548201
Alignment:
Q  80 agtatagtgaataagccatagttagatgatggtaaattagagttagttggttggttaggtagtgaagagttagttagactagcttaccttataaatatct 179  Q
    ||||||||||||||  |||| |||||| |||||||| ||   ||||||||||||||||||||| ||||||||||||||||| || ||  |||||||| ||    
T  548088 agtatagtgaataaatcatatttagataatggtaaactatgattagttggttggttaggtagttaagagttagttagactaactcacactataaataact 548187  T
Q  180 ctcactattgtact 193  Q
     | | |||||||||    
T  548188 ttaaatattgtact 548201  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 193
Target Start/End: Original strand, 25836364 - 25836478
Alignment:
Q  81 gtatagtgaataagccatagttagatgatgg-taaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatatc 178  Q
    ||||||||||||| |||||||||| |||| | |||| ||  | ||||||||| |||||||||| | |||||||||||||||| | | ||||||||||| |    
T  25836364 gtatagtgaataaaccatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataac 25836463  T
Q  179 tctcactattgtact 193  Q
    |||||| ||||||||    
T  25836464 tctcaccattgtact 25836478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 192
Target Start/End: Complemental strand, 26667227 - 26667113
Alignment:
Q  80 agtatagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaatat 177  Q
    |||||||||||| | |||||||||| | ||  ||||||||  ||||||||||| |||||||||| ||||||||||||||||| || | || ||||||||     
T  26667227 agtatagtgaattaaccatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataa 26667128  T
Q  178 ctctcactattgtac 192  Q
    ||||||| |||||||    
T  26667127 ctctcaccattgtac 26667113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 192
Target Start/End: Complemental strand, 9032902 - 9032830
Alignment:
Q  121 gttagttggttggttaggtagtgaagagttagttagactagc-ttaccttataaatatctctcactattgtac 192  Q
    ||||| |||||||||  ||||| ||||||||||||||||| | || ||||||||||| || |||| |||||||    
T  9032902 gttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcaccattgtac 9032830  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 14007624 - 14007741
Alignment:
Q  84 tagtgaataagccatagttagatgatg-gtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-----ccttataaatat 177  Q
    |||||||||| |||||||||| | ||  ||||| ||  |||||||||||||||||||||| ||||||||||||||||| ||||     || ||||||||     
T  14007624 tagtgaataaaccatagttagttaatatgtaaactatggttagttggttggttaggtagttaagagttagttagactaacttactcacccatataaataa 14007723  T
Q  178 ctctcactattgtactat 195  Q
    ||||||| ||||||||||    
T  14007724 ctctcaccattgtactat 14007741  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 20957431 - 20957514
Alignment:
Q  78 agagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagttagacta 160  Q
    |||||||||||||||| |||||||||| | ||  ||||||||  ||||||| ||| ||||||||||   |||||||||||||||    
T  20957431 agagtatagtgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagacta 20957514  T

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Target: scaffold0160 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 28397 - 28483
Alignment:
Q  72 tttatcagagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagttaga 157  Q
    ||||| |||||||| ||||||| |||||||||| |||| |||||| ||  ||||||||||||||||   ||| ||||||||||||||    
T  28397 tttattagagtatattgaataaaccatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttaga 28483  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 193
Target Start/End: Complemental strand, 29598214 - 29598097
Alignment:
Q  78 agagtatagtgaataagccatagttagatgat-ggtaaattagagttagttggttggttaggtagtgaagagttagttagactagctta-ccttataaat 175  Q
    |||||||||||||||| |||||||||| | ||  ||||| ||  ||||||| || |||||||| || | ||||||||||||||| || | || |||||||    
T  29598214 agagtatagtgaataaaccatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaat 29598115  T
Q  176 atctctcactattgtact 193  Q
    | ||||||| ||| ||||    
T  29598114 aactctcaccattatact 29598097  T

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