View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13538_high_1 (Length: 743)
Name: NF13538_high_1
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13538_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 78 - 476
Target Start/End: Original strand, 24195048 - 24195450
Alignment:
| Q |
78 |
atatgttacaaactctaaatttaaagaactgcatatgtaatatggcctaaattctactaaaacttttggaatttattgttctactgaaattcagtaagta |
177 |
Q |
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| T |
24195048 |
atatattacaaactctaaatttaaaggactgcatatgtaatatggcctaaattctactaaaacttttggaatttattgttctactgagattcagtaagta |
24195147 |
T |
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| Q |
178 |
tttattagtatcatactatcatataaagcaaccgcaaaaatatatttttgacttataaagagaaatatcttaatatgttgtagagtattacaccaaagtt |
277 |
Q |
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| T |
24195148 |
tttattagtatcatactatcatataa-gcaaccgcaaaaatatatttttgacttataaagagcaatatcttaatatgttgtagagtattacaccaaagtt |
24195246 |
T |
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| Q |
278 |
aagagaaaagatgacaatcttaataatattgtttgctgattta-----ttttatttcattatcattatcattatcgtatagtagaaatctatgattgtaa |
372 |
Q |
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| T |
24195247 |
aagagaaaagatgacaatcttaataatattgtttgctgatttattttattttattccattatcattatcattatcgtatagtagaaatctatgattgtaa |
24195346 |
T |
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| Q |
373 |
ggttcatataataaggaaaaggaaataaaaacaaaacaaatccaattattgggtggcaatttaataattaaatgaaatctcatgaaatgttttatcacaa |
472 |
Q |
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| T |
24195347 |
ggttcatataattaggaaaaggaaataaaaacaaaacaaatccaattattgggtggcaatttaataattaaatgaaatctcatggaatgttttatcacaa |
24195446 |
T |
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| Q |
473 |
gaga |
476 |
Q |
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| T |
24195447 |
gaga |
24195450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 508 - 728
Target Start/End: Original strand, 24195483 - 24195703
Alignment:
| Q |
508 |
ccttcattgtagagtatttgggaccatatgtaagaacacattcacatttgttattcacacaccacgcaacccgaggtgctaaacacatgttttttggaca |
607 |
Q |
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| T |
24195483 |
ccttcattgtagagtatttgggaccatatgtaagaacacattcacatttgttattcacacaccacgcaacccgaggtgctaaacacatgttttttggaca |
24195582 |
T |
|
| Q |
608 |
atcagagtcgtttttacattcaatatgtgctgtaatgaaaaaagaaaatatgagaatgttgttgaataaaagggataaaagatttgtacaaagtgaagaa |
707 |
Q |
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| T |
24195583 |
atcaaagtcgtttttacattcaatatgtgctgtaatgaaaaaagaaaatatgagaatgttgttgaataaaagggataaaagatttgtacaaagtgaagaa |
24195682 |
T |
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| Q |
708 |
agaaaatttaaaagcatgaaa |
728 |
Q |
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| T |
24195683 |
agaaactttaaaagcatgaaa |
24195703 |
T |
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Back To:
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