View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13538_high_11 (Length: 216)
Name: NF13538_high_11
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13538_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 19 - 165
Target Start/End: Complemental strand, 24081347 - 24081201
Alignment:
| Q |
19 |
gatcagaaattgcagatgttacgtcttccacattttgaagatgtcctcttccccgacgatatcttctaccacaacaccccaatccacccaagagtgtaac |
118 |
Q |
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| T |
24081347 |
gatcagaaattgcagatgttacgtcttccacatcttgaagatgtcctcttccccgacgatatcttctaccacaacaccccaatccaaccaagagtgtaac |
24081248 |
T |
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| Q |
119 |
cacagatacaataatagtcattggcctattccagcctctaatcacat |
165 |
Q |
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| T |
24081247 |
cacagagacaataatagtcattggcctactccagcctctaatcacat |
24081201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 29109476 - 29109561
Alignment:
| Q |
77 |
atatcttctaccacaacaccccaatccacccaagagtgtaaccacagatacaataatagtcattggcctattccagcctctaatca |
162 |
Q |
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| T |
29109476 |
atatcttctaccacaatacctcaatccacccaagaatataaccacagagacaataatggtcatagtcctattccagtctctaatca |
29109561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 161
Target Start/End: Complemental strand, 29262698 - 29262614
Alignment:
| Q |
77 |
atatcttctaccacaacaccccaatccacccaagagtgtaaccacagatacaataatagtcattggcctattccagcctctaatc |
161 |
Q |
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|||||| ||||||||||||| |||||||| |||| | |||||||||| |||||||||||||| | | ||||||||||||||||| |
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| T |
29262698 |
atatctcctaccacaacaccttaatccacctaagaatataaccacagagacaataatagtcatagtcatattccagcctctaatc |
29262614 |
T |
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