View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13538_high_3 (Length: 471)
Name: NF13538_high_3
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13538_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 202 - 452
Target Start/End: Original strand, 51824794 - 51825044
Alignment:
| Q |
202 |
ttttgcttgcgtcgaaagaataatataatttatgcatcaaacaaatctcatcacaaagtagttctagacgttgagttcacccttgattgagaatgtttca |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
51824794 |
ttttgcttgcgtcgaaagaataatataatttatgcatcaaacaaatctcatcacaaattagttcttgacgttgaattcacccttgattgagaatgtttca |
51824893 |
T |
|
| Q |
302 |
acatttcaataaaggatagacagagacatggaaaaaggatttattgtgcgagccaatttgagttatttaagattacatgtaggcagatgcaacatgctat |
401 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51824894 |
acatttcaatcaaggatagacagagacatggaaaaaggatttattgtgcgagccaatttgagttatttaagattacatgtaggcagatgcaacatgctat |
51824993 |
T |
|
| Q |
402 |
atttccttgaataaaaactttaatctaatttgcttgagaggcatacctgac |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51824994 |
atttccttgaataaaaactttaatctaatttgcttgagaggcatacctgac |
51825044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 51824399 - 51824590
Alignment:
| Q |
15 |
catcactcaggaaatatgcaaagtaaataacaagaggcaaaccaatttgcacaatggactagaattaaaattaagattttctttactaagaaaatgacat |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51824399 |
catcactcaggaaatatgcaaagtaaataacaagaggccaaccaatttgcacaatggactagaattaaaattaagattttctttactaagaaaatgacat |
51824498 |
T |
|
| Q |
115 |
tatgcatcaatttctagtgacacaagaggctttggctcttcagcaaaccttgaattggatggaatcagttggtatataaaatgtgatttttg |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51824499 |
tatgcatcaatttctagtgacacaagaggctttggctcttcagcaaaccttgaattggatggaatcagttggtatataaaatgtgatttttg |
51824590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 38 - 114
Target Start/End: Original strand, 51827644 - 51827720
Alignment:
| Q |
38 |
taaataacaagaggcaaaccaatttgcacaatggactagaattaaaattaagattttctttactaagaaaatgacat |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||| | ||||||||||| ||||||||||||||||| |
|
|
| T |
51827644 |
taaataacaagaggcaaatcaatttgcacaatgaactagaatctagattaagatttttaatactaagaaaatgacat |
51827720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University