View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13538_high_6 (Length: 376)
Name: NF13538_high_6
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13538_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 24081512 - 24081201
Alignment:
| Q |
13 |
aggagaacatcgaaagactgaaatggtatggtagcaatagcataataaaaccaatgatatatgtttttatgttttgataaaactttcaccggaatttaaa |
112 |
Q |
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| T |
24081512 |
aggagaacatcgaaagactgaaatggtatagtagcaatagcataataaaaccaatgatat--gtttttatgttttgataaaactttcacccaaatttaaa |
24081415 |
T |
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| Q |
113 |
acatattaaatataagttttattgtcctctcaagtagca-taggaattactaatatatgtttttatagatcagaaattgcagatgttacgtcttccacat |
211 |
Q |
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| T |
24081414 |
acatattaaagataagttttgttgtcgtctcaagtagcaataggaattactaatatatgtttttatagatcagaaattgcagatgttacgtcttccacat |
24081315 |
T |
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| Q |
212 |
tttgaagatgtcctcttccccgacgatatcttctaccacaacaccccaatccacccaagagtgtaaccacagatacaataatagtcattggcctattcca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
24081314 |
cttgaagatgtcctcttccccgacgatatcttctaccacaacaccccaatccaaccaagagtgtaaccacagagacaataatagtcattggcctactcca |
24081215 |
T |
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| Q |
312 |
gcctctaatcacat |
325 |
Q |
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|||||||||||||| |
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| T |
24081214 |
gcctctaatcacat |
24081201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 322
Target Start/End: Original strand, 29109476 - 29109561
Alignment:
| Q |
237 |
atatcttctaccacaacaccccaatccacccaagagtgtaaccacagatacaataatagtcattggcctattccagcctctaatca |
322 |
Q |
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| T |
29109476 |
atatcttctaccacaatacctcaatccacccaagaatataaccacagagacaataatggtcatagtcctattccagtctctaatca |
29109561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 321
Target Start/End: Complemental strand, 29262698 - 29262614
Alignment:
| Q |
237 |
atatcttctaccacaacaccccaatccacccaagagtgtaaccacagatacaataatagtcattggcctattccagcctctaatc |
321 |
Q |
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|||||| ||||||||||||| |||||||| |||| | |||||||||| |||||||||||||| | | ||||||||||||||||| |
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| T |
29262698 |
atatctcctaccacaacaccttaatccacctaagaatataaccacagagacaataatagtcatagtcatattccagcctctaatc |
29262614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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