View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13538_high_7 (Length: 329)

Name: NF13538_high_7
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13538_high_7
NF13538_high_7
[»] chr5 (2 HSPs)
chr5 (74-300)||(41367933-41368159)
chr5 (85-167)||(38734641-38734723)
[»] chr2 (1 HSPs)
chr2 (85-167)||(6407949-6408031)
[»] chr1 (3 HSPs)
chr1 (85-167)||(8245391-8245473)
chr1 (85-164)||(23391933-23392012)
chr1 (85-129)||(38645197-38645241)
[»] chr6 (2 HSPs)
chr6 (85-138)||(278187-278240)
chr6 (85-126)||(33940956-33940997)
[»] chr3 (3 HSPs)
chr3 (208-314)||(44281752-44281859)
chr3 (85-167)||(54449796-54449878)
chr3 (85-144)||(25750882-25750941)
[»] chr4 (2 HSPs)
chr4 (85-167)||(53142140-53142222)
chr4 (87-144)||(38516105-38516162)
[»] chr8 (1 HSPs)
chr8 (85-149)||(39141900-39141964)
[»] chr7 (2 HSPs)
chr7 (85-129)||(31446663-31446707)
chr7 (85-137)||(9417182-9417234)
[»] scaffold1786 (1 HSPs)
scaffold1786 (85-144)||(1190-1249)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 74 - 300
Target Start/End: Complemental strand, 41368159 - 41367933
Alignment:
Q  74 ttatttaacacaataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaatatttttcggt 173  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  41368159 ttatttaacacaataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatctaattgtgtcgaaatatttttcagt 41368060  T
Q  174 tagagttgtgcccacataagagttgctcatctaagccattgcaatcccaacaaactaagtgaagaaaacacacaactagccatcccaaacaagagttgca 273  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  41368059 tagagttgtgccgacagaagagttgctcatctaagccattgcaatcccaacaaactaagtgaagaaaaaacacaactagccatcccaaataagagttgca 41367960  T
Q  274 ggcttgaatattgaaggctagaaccat 300  Q
    | |||||||||||||||||||||||||    
T  41367959 gacttgaatattgaaggctagaaccat 41367933  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 38734723 - 38734641
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaatattt 167  Q
    |||||||  |||| |||||||||||||||||  |||||||||||| |||||||| ||||| |||| | |||||| ||||||||    
T  38734723 aataattagatcacatcaatcaacatcatttagttttattctcttttaatttttgcatttgatgtgagtgtgtctaaatattt 38734641  T

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Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 6407949 - 6408031
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaatattt 167  Q
    ||||||| ||||| |||||||||||||||||  |||||||||||| |||||||| ||||| |||||| |||||| ||||||||    
T  6407949 aataattaaatcacatcaatcaacatcatttagttttattctcttttaatttttgcatttgatgtaagtgtgtctaaatattt 6408031  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 8245473 - 8245391
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaatattt 167  Q
    ||||||| ||||| ||||||||||||||||| ||||||||||||| |||||||| ||||| |||| | |||| | ||||||||    
T  8245473 aataattaaatcacatcaatcaacatcatttaattttattctcttttaatttttgcatttgatgtgagtgtgcctaaatattt 8245391  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 23391933 - 23392012
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaata 164  Q
    ||||||| ||||| |||||||||||||||||  |||||||||||| || ||||| ||||| |||| | |||||| |||||    
T  23391933 aataattgaatcacatcaatcaacatcatttagttttattctcttttagtttttgcatttgatgtgagtgtgtctaaata 23392012  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 38645241 - 38645197
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctctt 129  Q
    ||||||||||||| ||||||  ||||||||| |||||||||||||    
T  38645241 aataatttaatcacatcaattgacatcatttaattttattctctt 38645197  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 278240 - 278187
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaattttt 138  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  278240 aataatttaatcacatcaatcaacgtcatttgattttattctcttttaattttt 278187  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 126
Target Start/End: Complemental strand, 33940997 - 33940956
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattct 126  Q
    ||||||||||||| ||||||||||||||||| ||||||||||    
T  33940997 aataatttaatcacatcaatcaacatcatttaattttattct 33940956  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 44281859 - 44281752
Alignment:
Q  208 gccattgcaatcccaacaaactaagtgaagaaaacacacaactagccat-cccaaacaagagttgca-ggcttgaatattgaaggctagaaccatataga 305  Q
    ||||||||||||||||||||| |||||||| ||||| ||||| | |||| ||||||||||| ||||| ||| || |||  |||||||||||||||| |||    
T  44281859 gccattgcaatcccaacaaaccaagtgaag-aaacaaacaacaacccatccccaaacaagacttgcagggcctgcatacagaaggctagaaccatacaga 44281761  T
Q  306 ggtgtgatt 314  Q
    || ||||||    
T  44281760 ggcgtgatt 44281752  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 54449878 - 54449796
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaatattt 167  Q
    |||||||  |||| ||||||||| |||||||  |||||||||||| |||||||| |||||||||| | |||||| ||||||||    
T  54449878 aataattagatcacatcaatcaatatcatttagttttattctcttttaatttttgcatttaatgtgaatgtgtctaaatattt 54449796  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 25750882 - 25750941
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccattt 144  Q
    ||||||| ||| | ||||||||||||||||| |||||||| |||| |||||||| |||||    
T  25750882 aataattaaattacatcaatcaacatcatttaattttattttcttttaatttttgcattt 25750941  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 167
Target Start/End: Complemental strand, 53142222 - 53142140
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgtaattgtgtcgaaatattt 167  Q
    ||||||| ||||| ||||||||||||||||| |||||||| |||| |||||||| ||||| || | | |||||| ||||||||    
T  53142222 aataattaaatcacatcaatcaacatcatttaattttattttcttttaatttttacatttgatatcagtgtgtctaaatattt 53142140  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 38516162 - 38516105
Alignment:
Q  87 taatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccattt 144  Q
    ||||| ||||| ||||||||||||||||| ||||||||||||| ||| |||| |||||    
T  38516162 taattaaatcacatcaatcaacatcatttaattttattctcttttaaatttttcattt 38516105  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 39141900 - 39141964
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccatttaatgt 149  Q
    ||||||| ||||||||||||||| || |||| ||||||||||||| |||||||| ||||| ||||    
T  39141900 aataattaaatcatatcaatcaatattatttaattttattctcttttaatttttgcatttgatgt 39141964  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 31446707 - 31446663
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctctt 129  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||    
T  31446707 aataatttattcatatcaatcaacatcatttaattttattctctt 31446663  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 9417234 - 9417182
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttt 137  Q
    |||||||  ||||||| |||||||||||||| ||||||||||||| |||||||    
T  9417234 aataattagatcatattaatcaacatcatttaattttattctcttttaatttt 9417182  T

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Target: scaffold1786 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 1249 - 1190
Alignment:
Q  85 aataatttaatcatatcaatcaacatcatttgattttattctcttgtaatttttccattt 144  Q
    ||||||| ||||| |||||||||||||||||  |||||||||||| || ||||| |||||    
T  1249 aataattgaatcacatcaatcaacatcatttagttttattctcttttagtttttgcattt 1190  T

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