View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13538_low_2 (Length: 507)

Name: NF13538_low_2
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13538_low_2
NF13538_low_2
[»] chr6 (14 HSPs)
chr6 (50-492)||(7993433-7993875)
chr6 (50-288)||(6432557-6432798)
chr6 (50-207)||(6403287-6403444)
chr6 (89-225)||(8913583-8913723)
chr6 (58-227)||(7132031-7132200)
chr6 (20-157)||(6588918-6589055)
chr6 (89-209)||(6594137-6594257)
chr6 (136-227)||(6423709-6423800)
chr6 (245-296)||(6436833-6436884)
chr6 (392-453)||(6417164-6417225)
chr6 (96-216)||(6436683-6436801)
chr6 (56-227)||(6596462-6596633)
chr6 (249-354)||(8913442-8913547)
chr6 (83-111)||(6602837-6602865)
[»] chr4 (5 HSPs)
chr4 (19-120)||(1600779-1600880)
chr4 (50-133)||(55908335-55908418)
chr4 (49-207)||(3438186-3438343)
chr4 (89-161)||(53761367-53761439)
chr4 (88-157)||(21833970-21834039)
[»] chr1 (7 HSPs)
chr1 (51-277)||(33160914-33161152)
chr1 (56-188)||(29658508-29658640)
chr1 (56-188)||(29691023-29691155)
chr1 (56-188)||(29718535-29718667)
chr1 (56-228)||(30827510-30827682)
chr1 (83-120)||(19468128-19468165)
chr1 (248-294)||(30827723-30827769)
[»] chr2 (1 HSPs)
chr2 (50-133)||(1037271-1037354)
[»] scaffold0262 (1 HSPs)
scaffold0262 (50-141)||(326-417)
[»] chr8 (1 HSPs)
chr8 (21-133)||(17627666-17627778)
[»] chr7 (2 HSPs)
chr7 (392-453)||(10615785-10615846)
chr7 (89-157)||(10615035-10615103)
[»] scaffold0014 (1 HSPs)
scaffold0014 (20-80)||(89137-89197)
[»] chr5 (4 HSPs)
chr5 (252-296)||(17205662-17205706)
chr5 (51-158)||(41889136-41889243)
chr5 (20-157)||(28532084-28532221)
chr5 (89-153)||(12846038-12846102)


Alignment Details
Target: chr6 (Bit Score: 383; Significance: 0; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 50 - 492
Target Start/End: Complemental strand, 7993875 - 7993433
Alignment:
Q  50 gagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatca 149  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7993875 gagtgaaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcagcaacatgtagatca 7993776  T
Q  150 ttcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatgtagctagtgtcattgtgaccga 249  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7993775 ttcagaaaataaataccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatgtagctagtgtcattgtgaccga 7993676  T
Q  250 ggttgagttctttgagcaaagggaaacagttggcaatgaataacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaagttttaat 349  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  7993675 ggttgagttctttgagcaaagggaaacaattggcaatgagtaacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaaattgtaat 7993576  T
Q  350 gttttgcgcaaatgctcgcagaccatagccgggaaagatgccttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccgg 449  Q
    |||||| ||||||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  7993575 gttttgggcaaatgctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccgc 7993476  T
Q  450 agaaccttgtcaaggtcacaacggtagttcgagaggttgaggg 492  Q
    |||| |||||||||||||||| |||||||||||||||||||||    
T  7993475 agaaacttgtcaaggtcacaatggtagttcgagaggttgaggg 7993433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 288
Target Start/End: Original strand, 6432557 - 6432798
Alignment:
Q  50 gagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatca 149  Q
    ||||| ||||| |||||||||||||||    ||||| | ||||||||||||||||||||||||| ||||||  || ||| || ||||||||||| |||||    
T  6432557 gagtgaaaacagggctgattctgtgagatatcgacaattactaaggtttatagacaccaaatcagcaagaaacaaagacgacccggcaacatgttgatca 6432656  T
Q  150 ttcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatgtagctagtg----tcattgtga 245  Q
    || ||||||| ||  |||  |||||| |||||||||||| ||| ||||||||| || | | | |||||| ||||| ||| | | |||      | |||||    
T  6432657 tttagaaaatgaagtccacaaagatccaaatgttgtatatatctacacttggataatagagattgaaatgcattagtgt-gattgtggataaaagtgtga 6432755  T
Q  246 ccgaggttgagttctttgagcaaagggaaacagttggcaatga 288  Q
    || |||||||||| |||||||||||||||||| | ||||||||    
T  6432756 ccaaggttgagttgtttgagcaaagggaaacaatcggcaatga 6432798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 50 - 207
Target Start/End: Original strand, 6403287 - 6403444
Alignment:
Q  50 gagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatca 149  Q
    ||||| |||||||| ||||| | | ||||||  ||||  | ||||||||||||||||||| |||   ||||  || || ||||| |||||||||| ||||    
T  6403287 gagtgaaaacaaggttgattttctaagcatcaaacatgaattaaggtttatagacaccaactcatgtagaaacaaagaaaactcagcaacatgtaaatca 6403386  T
Q  150 ttcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaaca 207  Q
    |||||||||||| ||  ||||||||| |||||||||||||||| ||||||||| ||||    
T  6403387 ttcagaaaataactgttattaagatccaaatgttgtatacatctacacttggataaca 6403444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 8913723 - 8913583
Alignment:
Q  89 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattc----agaaaataaatgccattaagatctaaatgttg 184  Q
    ||||||||||||||||||||||| ||||||||  || ||||||| | |||||||| ||||||||    | ||||||| ||| ||||||| | ||||||||    
T  8913723 actaaggtttatagacaccaaattaccaagaaacaaagacaacttgacaacatgttgatcattcatatataaaataagtgctattaagaaccaaatgttg 8913624  T
Q  185 tatacatcgacacttggacaacaaatagtgaaattcattaa 225  Q
    || |||| |||||||||| ||||||| ||||| || |||||    
T  8913623 taaacattgacacttggataacaaatggtgaatttaattaa 8913583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 227
Target Start/End: Original strand, 7132031 - 7132200
Alignment:
Q  58 acaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaa 157  Q
    |||||||| ||||||||||||||| ||| |||| |||||||| |||||  || |||| |||||   | |||||||| | |||||||  ||||||||||||    
T  7132031 acaaggctaattctgtgagcatccaacagtcacgaaggtttacagacagtaagtcacgaagaaaccaagacaactcagaaacatgttcatcattcagaaa 7132130  T
Q  158 ataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatg 227  Q
    |||  |||   ||||||  ||||||||||||||||| |||||||| |||| | |||||| | ||||||||    
T  7132131 atatgtgcacctaagattcaaatgttgtatacatcgccacttggataacatacagtgaattccattaatg 7132200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 6589055 - 6588918
Alignment:
Q  20 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaaga 119  Q
    |||||||  ||||||||||||||||  |   ||||||||||| ||||||||||||| | | |  || | |||||||||||  ||||||||||||||||||    
T  6589055 gatctcaccaagtaaaggacacttcctagcaagtgcaaacaaagctgattctgtgatcttactgcaattactaaggtttacggacaccaaatcaccaaga 6588956  T
Q  120 agtaatgacaactcggcaacatgtagatcattcagaaa 157  Q
    |   | ||||| ||| |||||||| |||||||||||||    
T  6588955 aaggaagacaattcgacaacatgttgatcattcagaaa 6588918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 209
Target Start/End: Complemental strand, 6594257 - 6594137
Alignment:
Q  89 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtata 188  Q
    ||||||||| || |||  |||| || ||||||  || |||||||||||||||||| ||||||||||||||  |  |   |||||||  ||||||||||||    
T  6594257 actaaggttaatggacttcaaaccagcaagaaacaaagacaactcggcaacatgttgatcattcagaaaacgagcgtacttaagattcaaatgttgtata 6594158  T
Q  189 catcgacacttggacaacaaa 209  Q
    |||||||||||||| ||||||    
T  6594157 catcgacacttggataacaaa 6594137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 6423709 - 6423800
Alignment:
Q  136 caacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatg 227  Q
    |||||||| |||| ||||||||||||||||  | |||||  ||||||||||||||| |||||||||| ||||||| | ||| | ||||||||    
T  6423709 caacatgttgatccttcagaaaataaatgcagtcaagattcaaatgttgtatacattgacacttggataacaaattgcgaattccattaatg 6423800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 245 - 296
Target Start/End: Original strand, 6436833 - 6436884
Alignment:
Q  245 accgaggttgagttctttgagcaaagggaaacagttggcaatgaataacagg 296  Q
    |||||||||||||| |||||||||||||||||| | |||||||| |||||||    
T  6436833 accgaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacagg 6436884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 6417164 - 6417225
Alignment:
Q  392 ttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaa 453  Q
    ||||| |||||||||||| |||||||||||||||||||| |||  ||||||||  |||||||    
T  6417164 ttggttggagatattaagtgatgtgatgttcaatgatggaaaacgagagattttacggagaa 6417225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 96 - 216
Target Start/End: Original strand, 6436683 - 6436801
Alignment:
Q  96 tttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataaatgccattaagatctaaatgttgtatacatcgac 195  Q
    |||||||||||||||||| |||| |  || ||||||| ||||||||||  ||  |||||||| ||| | | || |||||| |||||||||||||   |||    
T  6436683 tttatagacaccaaatcagcaaggaagaaagacaacttggcaacatgtttattcttcagaaagtaactacgatcaagatccaaatgttgtatac--tgac 6436780  T
Q  196 acttggacaacaaatagtgaa 216  Q
    ||||||| |||||| ||||||    
T  6436781 acttggataacaaagagtgaa 6436801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 227
Target Start/End: Complemental strand, 6596633 - 6596462
Alignment:
Q  56 aaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcaga 155  Q
    ||||| |||||||||||||||| |   ||| | | ||||||||||||| ||||||||||||||||  || || ||| | |||||||||  |||||| |||    
T  6596633 aaacacggctgattctgtgagccttgaacaatgattaaggtttatagaaaccaaatcaccaagaaacaaagagaacccagcaacatgtgtatcattaaga 6596534  T
Q  156 aaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatg 227  Q
    ||| || |||  |  ||||  |||||||| ||| ||||||| || || |||| | |||||| ||| ||||||    
T  6596533 aaaaaagtgcattccagattcaaatgttgaataaatcgacaatttgataacagagagtgaatttcgttaatg 6596462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 354
Target Start/End: Complemental strand, 8913547 - 8913442
Alignment:
Q  249 aggttgagttctttgagcaaagggaaacagttggcaatgaataacaggccgcccttaccaagaaaagtattggaacaattgagagaggtcaaagttttaa 348  Q
    |||||||||||||| ||||||||||||||     ||| |||||||||   |   ||| |||||||  | ||||||||||||||||||||||||||| |||    
T  8913547 aggttgagttctttaagcaaagggaaacaaccaacaacgaataacagtttgttgttatcaagaaacatgttggaacaattgagagaggtcaaagttgtaa 8913448  T
Q  349 tgtttt 354  Q
    | ||||    
T  8913447 tctttt 8913442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 6602865 - 6602837
Alignment:
Q  83 acattcactaaggtttatagacaccaaat 111  Q
    |||||||||||||||||||||||||||||    
T  6602865 acattcactaaggtttatagacaccaaat 6602837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 1600779 - 1600880
Alignment:
Q  19 cgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaag 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||    
T  1600779 cgatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatactacattcactaaggtttatagaaaccaaatcaccaag 1600878  T
Q  119 aa 120  Q
    ||    
T  1600879 aa 1600880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 55908418 - 55908335
Alignment:
Q  50 gagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactc 133  Q
    ||||||||||| ||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||  || ||||||||    
T  55908418 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactc 55908335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 49 - 207
Target Start/End: Complemental strand, 3438343 - 3438186
Alignment:
Q  49 tgagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatc 148  Q
    |||||| ||| |||||| ||| ||||||||||  ||| |||||||||||||||||||||||||||||| |||  |  ||||||| | |||||||  ||||    
T  3438343 tgagtgaaaataaggctaattttgtgagcatcgaacaatcactaaggtttatagacaccaaatcaccatgaaacatggacaacttgacaacatggcgatc 3438244  T
Q  149 attcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaaca 207  Q
    ||| ||||| ||| |    | |||||| ||||||||||||||| |||||||||| ||||    
T  3438243 atttagaaagtaagt-ttttgaagatccaaatgttgtatacattgacacttggataaca 3438186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 53761439 - 53761367
Alignment:
Q  89 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaaataa 161  Q
    |||||||||||| |||||||||||||||||||| || ||||| |   |||||||| |||  ||||||||||||    
T  53761439 actaaggtttatggacaccaaatcaccaagaagcaaagacaaatttacaacatgttgattgttcagaaaataa 53761367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 157
Target Start/End: Complemental strand, 21834039 - 21833970
Alignment:
Q  88 cactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaa 157  Q
    ||||||||||||| || | |||||||||||||| | |  |||||| | |||||||| |||||||||||||    
T  21834039 cactaaggtttatggaaatcaaatcaccaagaaatgaatacaactggacaacatgttgatcattcagaaa 21833970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 51 - 277
Target Start/End: Original strand, 33160914 - 33161152
Alignment:
Q  51 agtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcat 150  Q
    |||| |||||| ||||||||||||||| ||| |||| || |||||||||||||||||||| || ||||||  || || ||||||||||||||| ||||||    
T  33160914 agtgaaaacaatgctgattctgtgagcctccaacatccattaaggtttatagacaccaaagcagcaagaaacaaagagaactcggcaacatgttgatcat 33161013  T
Q  151 tcagaaaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatgtagctagtgtcatt--------- 241  Q
    ||||||||||| ||  ||| ||||| |||| ||||||| || |||| ||||| || | | |||||||| |||||||| || |||||| |||             
T  33161014 tcagaaaataagtgtgatttagatccaaatattgtatatattgacagttggataagagagagtgaaatccattaatgaagttagtgtgattgttgaactg 33161113  T
Q  242 ---gtgaccgaggttgagttctttgagcaaagggaaaca 277  Q
       ||||||||||||||||| ||||||||||||||||||    
T  33161114 agggtgaccgaggttgagttttttgagcaaagggaaaca 33161152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 29658640 - 29658508
Alignment:
Q  56 aaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcaga 155  Q
    |||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||| | ||||||  || || ||||||||||||||| ||||||| |||    
T  29658640 aaacaaagctgattctgtcagcttccaacatccagtaaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgaga 29658541  T
Q  156 aaataaatgccattaagatctaaatgttgtata 188  Q
    || | | ||| | ||||||| ||||||||||||    
T  29658540 aacttagtgcgactaagatccaaatgttgtata 29658508  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 29691155 - 29691023
Alignment:
Q  56 aaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcaga 155  Q
    |||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||| | ||||||  || || ||||||||||||||| ||||||| |||    
T  29691155 aaacaaagctgattctgtcagcttccaacatccagtaaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgaga 29691056  T
Q  156 aaataaatgccattaagatctaaatgttgtata 188  Q
    |||| | ||  | ||||||| ||||||||||||    
T  29691055 aaattagtgtgactaagatccaaatgttgtata 29691023  T

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Target: chr1; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 29718667 - 29718535
Alignment:
Q  56 aaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcaga 155  Q
    |||||| ||||||||||| ||| ||| |||| || ||||||||||||||||||||| | ||||||  || || ||||||||||||||| ||||||| |||    
T  29718667 aaacaaagctgattctgtcagcttccaacatccagtaaggtttatagacaccaaatgagcaagaaacaaagagaactcggcaacatgttgatcattgaga 29718568  T
Q  156 aaataaatgccattaagatctaaatgttgtata 188  Q
    |||| | ||  | ||||||| ||||||||||||    
T  29718567 aaattagtgtgactaagatccaaatgttgtata 29718535  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 56 - 228
Target Start/End: Original strand, 30827510 - 30827682
Alignment:
Q  56 aaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcaga 155  Q
    |||||| ||||||||||| ||| ||| ||||  | |||||||||||||||| |||| |  |||||| || || || |||||||||||| ||||||| |||    
T  30827510 aaacaaagctgattctgttagcttccaacatcgagtaaggtttatagacactaaatgaggaagaagcaaagagaagtcggcaacatgttgatcattgaga 30827609  T
Q  156 aaataaatgccattaagatctaaatgttgtatacatcgacacttggacaacaaatagtgaaattcattaatgt 228  Q
    ||| || ||  | ||||||| |||||||||||| || || | |||||||| | | | |||||| |||||||||    
T  30827610 aaacaagtgaaactaagatccaaatgttgtatatatggagagttggacaagagagattgaaatccattaatgt 30827682  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 19468165 - 19468128
Alignment:
Q  83 acattcactaaggtttatagacaccaaatcaccaagaa 120  Q
    |||||||||||||||||||||||| |||||||||||||    
T  19468165 acattcactaaggtttatagacactaaatcaccaagaa 19468128  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 294
Target Start/End: Original strand, 30827723 - 30827769
Alignment:
Q  248 gaggttgagttctttgagcaaagggaaacagttggcaatgaataaca 294  Q
    ||||||||||| |||||||||||||||||| | |||||||| |||||    
T  30827723 gaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 30827769  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 1037354 - 1037271
Alignment:
Q  50 gagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactc 133  Q
    ||||||||||| ||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||  || ||||||||    
T  1037354 gagtgcaaacatggccgagtctgtgagcatgctacattcactaaggtttatagacaccaaatcaccaagaaacaaagacaactc 1037271  T

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Target: scaffold0262 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 50 - 141
Target Start/End: Original strand, 326 - 417
Alignment:
Q  50 gagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacat 141  Q
    ||||||||||| || ||| | ||||||||| | |||||||||||| ||||||||||||||||| |||||||  || |||||||| |||||||    
T  326 gagtgcaaacatggttgagtatgtgagcatgctacattcactaagatttatagacaccaaatcgccaagaaacaaagacaactctgcaacat 417  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 17627778 - 17627666
Alignment:
Q  21 atctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaa 120  Q
    |||||||||||| ||||||| ||   |  ||||| |||||||||||||||   |||||||||||| | ||||||||||| ||||||||||| ||||||||    
T  17627778 atctcattaagtgaaggacatttactaacgagtgaaaacaaggctgattcgtcgagcatccgacaataactaaggtttacagacaccaaattaccaagaa 17627679  T
Q  121 gtaatgacaactc 133  Q
     | | ||||||||    
T  17627678 atgaagacaactc 17627666  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 392 - 453
Target Start/End: Original strand, 10615785 - 10615846
Alignment:
Q  392 ttggtcggagatattaagggatgtgatgttcaatgatgggaaagtagagatttcccggagaa 453  Q
    ||||| ||| |||||||| ||||||||||||||||||||||||  ||||||||  |||||||    
T  10615785 ttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggagaa 10615846  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 157
Target Start/End: Original strand, 10615035 - 10615103
Alignment:
Q  89 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattcagaaa 157  Q
    |||||||||||| |||| |||||||||||||| | | ||||| | | |||||||| |||||||||||||    
T  10615035 actaaggtttatggacatcaaatcaccaagaaatgaagacaattggacaacatgttgatcattcagaaa 10615103  T

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Target: scaffold0014 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 89137 - 89197
Alignment:
Q  20 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatc 80  Q
    ||||||| | ||| ||||| | |||| ||||||||||||||||||||| ||||||||||||    
T  89137 gatctcactgagtgaaggatagttctaattgagtgcaaacaaggctgagtctgtgagcatc 89197  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 17205662 - 17205706
Alignment:
Q  252 ttgagttctttgagcaaagggaaacagttggcaatgaataacagg 296  Q
    |||||||||||||||||||||||||| | |||||||| |||||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacagg 17205706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 41889243 - 41889136
Alignment:
Q  51 agtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcat 150  Q
    |||||||| || |||||||||||||| |||  ||| | | | | ||||||||| |||||||||||||||| | | ||||||||  ||||||||  || ||    
T  41889243 agtgcaaagaatgctgattctgtgagtatcgaacaatgattcaagtttatagataccaaatcaccaagaaatgaagacaactccacaacatgtttatgat 41889144  T
Q  151 tcagaaaa 158  Q
    ||||||||    
T  41889143 tcagaaaa 41889136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 28532084 - 28532221
Alignment:
Q  20 gatctcattaagtaaaggacacttctcattgagtgcaaacaaggctgattctgtgagcatccgacattcactaaggtttatagacaccaaatcaccaaga 119  Q
    |||||||  |||||||||||| |||  |  |||||||||||| | ||||||||| ||| |   ||| | ||||||||| || |||| |||||||||||||    
T  28532084 gatctcaccaagtaaaggacagttcctagcgagtgcaaacaaagatgattctgttagcttatcacaattactaaggttgatggacatcaaatcaccaaga 28532183  T
Q  120 agtaatgacaactcggcaacatgtagatcattcagaaa 157  Q
    |   | ||||||| |  ||||||| |||||||||||||    
T  28532184 aacgaagacaactggataacatgttgatcattcagaaa 28532221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 12846038 - 12846102
Alignment:
Q  89 actaaggtttatagacaccaaatcaccaagaagtaatgacaactcggcaacatgtagatcattca 153  Q
    ||||| ||||||||| | ||||||||||||||| || || ||||  ||||||||| |||||||||    
T  12846038 actaacgtttatagaaatcaaatcaccaagaagcaaagataacttagcaacatgttgatcattca 12846102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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