View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13538_low_5 (Length: 395)

Name: NF13538_low_5
Description: NF13538
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13538_low_5
NF13538_low_5
[»] chr5 (6 HSPs)
chr5 (62-358)||(41781826-41782118)
chr5 (99-359)||(40519525-40519787)
chr5 (225-265)||(40510645-40510685)
chr5 (1-36)||(39527935-39527970)
chr5 (285-350)||(40510564-40510629)
chr5 (1-45)||(36569273-36569317)
[»] chr2 (2 HSPs)
chr2 (151-359)||(18163561-18163764)
chr2 (1-36)||(23497602-23497637)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-40)||(15686-15725)
[»] scaffold0036 (1 HSPs)
scaffold0036 (1-40)||(95148-95187)
[»] chr8 (4 HSPs)
chr8 (1-40)||(9998733-9998772)
chr8 (1-42)||(22762001-22762042)
chr8 (1-41)||(26737969-26738009)
chr8 (1-41)||(44814861-44814901)
[»] chr6 (1 HSPs)
chr6 (1-40)||(2958992-2959031)
[»] chr4 (2 HSPs)
chr4 (1-34)||(31436008-31436041)
chr4 (1-41)||(28033190-28033230)
[»] chr1 (2 HSPs)
chr1 (1-34)||(2208985-2209018)
chr1 (2-34)||(16261096-16261128)
[»] chr7 (2 HSPs)
chr7 (1-45)||(10166864-10166908)
chr7 (1-41)||(31717295-31717335)
[»] chr3 (1 HSPs)
chr3 (1-45)||(11312584-11312628)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 62 - 358
Target Start/End: Original strand, 41781826 - 41782118
Alignment:
Q  62 ttatttgagtatgaaatctctctagttctcnnnnnnnttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctctta 161  Q
    ||||||||||| || |||||||||||||||       ||||||||| |||||||||||||||||||||||||||               |||||||||||    
T  41781826 ttatttgagtaagatatctctctagttctcaaaaaaattcatatcatttattgatattagttttgaactctaaattttttgacttttttctagcctctta 41781925  T
Q  162 attgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg 261  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41781926 attgttaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataaaagtgtgaatg 41782025  T
Q  262 tgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc 358  Q
    |||    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41782026 tga----catgttgaagttcttcatgagaccatgggaaataattgtcacattaaactgttgatatggccatttggtatataaatgtattagggtgtc 41782118  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 99 - 359
Target Start/End: Complemental strand, 40519787 - 40519525
Alignment:
Q  99 ttcatatcagttattgatattagttttgaactctaaannnnnnnnnnnnnnnctagcctcttaattgctaaaactaacaatgcaagaggctaatatga-- 196  Q
    ||||||||||||||||||||||||||||| |||||||               ||||||||||||||| |||||||||||||||| |||| |||||| |      
T  40519787 ttcatatcagttattgatattagttttgagctctaaaaattttaacttttttctagcctcttaattgttaaaactaacaatgca-gaggataatataaca 40519689  T
Q  197 -aaataaaaattcgaatacaaagtcatcgcaatgttaat----atgttaatttacataaaagtgtgaatgtgacatgcatgttgaagttcttcatgagac 291  Q
     ||| |||||| | |||||||||||||| ||||||||||    ||||||||||||||||||||||||||||||||||    |||||||| ||||||||||    
T  40519688 aaaaaaaaaatcccaatacaaagtcatcacaatgttaattaatatgttaatttacataaaagtgtgaatgtgacatg----ttgaagttgttcatgagac 40519593  T
Q  292 catggggaataattatcacattaaactgttgatatggccatttggtatataaatgtattagggtgtca 359  Q
    ||||| |||||||| |||||||||| ||||||| || |||| ||||||||||||||| ||||||||||    
T  40519592 catggagaataattgtcacattaaattgttgatgtgaccatctggtatataaatgtaatagggtgtca 40519525  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 265
Target Start/End: Complemental strand, 40510685 - 40510645
Alignment:
Q  225 caatgttaatatgttaatttacataaaagtgtgaatgtgac 265  Q
    |||||||||| |||||| |||||||||||||||||||||||    
T  40510685 caatgttaatgtgttaaattacataaaagtgtgaatgtgac 40510645  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39527970 - 39527935
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttct 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  39527970 caatttcggcattttaccagttgaactaggacttct 39527935  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 350
Target Start/End: Complemental strand, 40510629 - 40510564
Alignment:
Q  285 atgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtatt 350  Q
    ||||||||||||| ||||||| |||||||||| ||||||| || ||||  |||| |||| ||||||    
T  40510629 atgagaccatgggaaataattgtcacattaaattgttgatgtgaccatcgggtagataagtgtatt 40510564  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 36569317 - 36569273
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatcattt 45  Q
    ||||||||||||||| |||||||| |||| |||||| ||||||||    
T  36569317 caatttcggcattttgccagttgagctaggacttctggatcattt 36569273  T

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Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 151 - 359
Target Start/End: Complemental strand, 18163764 - 18163561
Alignment:
Q  151 ctagcctcttaattgctaaaactaacaatgcaagaggctaatatgaaaataaaaattcgaatacaaagtcatcgcaatgttaatatgttaatttacataa 250  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||| | |||| | | || |||||||||||  |||||||||||||||||||||||||    
T  18163764 ctagcctcttagttgttaaaactaacaatgca-gaggctaatatgaacaaaaaagtcctaaaacaaagtcatcaaaatgttaatatgttaatttacataa 18163666  T
Q  251 aagtgtgaatgtgacatgcatgttgaagttcttcatgagaccatggggaataattatcacattaaactgttgatatggccatttggtatataaatgtatt 350  Q
    ||||||||||||||||||    |||||||| |||||||||||||| ||||| ||| |||||||||| ||||||| ||||||| |||||||||||| ||||    
T  18163665 aagtgtgaatgtgacatg----ttgaagttgttcatgagaccatgaggaatcattgtcacattaaattgttgatgtggccatctggtatataaatttatt 18163570  T
Q  351 agggtgtca 359  Q
    |||||||||    
T  18163569 agggtgtca 18163561  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23497602 - 23497637
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttct 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  23497602 caatttcggcattttaccagttgaactaggacttct 23497637  T

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Target: scaffold0122 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 15686 - 15725
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagat 40  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  15686 caatttcggcattttgccagttgaactaggacttctagat 15725  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 95187 - 95148
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagat 40  Q
    ||||||||||||||| |||||||||||||||||| |||||    
T  95187 caatttcggcattttgccagttgaactagaacttttagat 95148  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9998733 - 9998772
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagat 40  Q
    ||||||||||||||| ||||||||||||| ||||||||||    
T  9998733 caatttcggcattttgccagttgaactaggacttctagat 9998772  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 22762042 - 22762001
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatca 42  Q
    |||||||||||||||  ||||||||||||||||||| |||||    
T  22762042 caatttcggcattttgtcagttgaactagaacttctggatca 22762001  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26738009 - 26737969
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatc 41  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  26738009 caatttcggcattttaccagttgagctaggacttctggatc 26737969  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 44814901 - 44814861
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatc 41  Q
    ||||||||||||||| |||||||| |||| |||||||||||    
T  44814901 caatttcggcattttgccagttgagctaggacttctagatc 44814861  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2959031 - 2958992
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagat 40  Q
    |||||||| |||||||||||||||| ||||||||||||||    
T  2959031 caatttcgacattttaccagttgaattagaacttctagat 2958992  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31436008 - 31436041
Alignment:
Q  1 caatttcggcattttaccagttgaactagaactt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  31436008 caatttcggcattttaccagttgaactaggactt 31436041  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28033230 - 28033190
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatc 41  Q
    |||||||||||||||||||||||| |||| |||| ||||||    
T  28033230 caatttcggcattttaccagttgagctaggacttttagatc 28033190  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2208985 - 2209018
Alignment:
Q  1 caatttcggcattttaccagttgaactagaactt 34  Q
    |||||||||||||||| |||||||||||||||||    
T  2208985 caatttcggcattttatcagttgaactagaactt 2209018  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 16261128 - 16261096
Alignment:
Q  2 aatttcggcattttaccagttgaactagaactt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  16261128 aatttcggcattttaccagttgaactaggactt 16261096  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10166908 - 10166864
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatcattt 45  Q
    |||||||||||||||| ||||||| |||| |||||| ||||||||    
T  10166908 caatttcggcattttatcagttgagctaggacttcttgatcattt 10166864  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 31717335 - 31717295
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatc 41  Q
    |||||||||||||||||||||||| |||| |||||| ||||    
T  31717335 caatttcggcattttaccagttgagctaggacttctggatc 31717295  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11312628 - 11312584
Alignment:
Q  1 caatttcggcattttaccagttgaactagaacttctagatcattt 45  Q
    ||||||||||||||| |||||||| |||| |||||||||| ||||    
T  11312628 caatttcggcattttgccagttgagctaggacttctagattattt 11312584  T

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