View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13539_high_10 (Length: 335)
Name: NF13539_high_10
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_10 |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 499719 - 499394
Alignment:
| Q |
10 |
aaaaatatgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgat |
109 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499719 |
aaaaaaatgggggaatggggctgtgcatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgat |
499620 |
T |
|
| Q |
110 |
caaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499619 |
caaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagt |
499520 |
T |
|
| Q |
210 |
cagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
499519 |
cagtgaatctgtattcccattaaaaattaccatacgttcggcttttgcggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcg |
499420 |
T |
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| Q |
310 |
tcgattaactcgtatgaccatcgagg |
335 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
499419 |
tcgattaactcgtatgaccatcgagg |
499394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 10 - 335
Target Start/End: Complemental strand, 6924467 - 6924142
Alignment:
| Q |
10 |
aaaaatatgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgat |
109 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924467 |
aaaaaaatgggggaatggggctgtgcatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgat |
6924368 |
T |
|
| Q |
110 |
caaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
6924367 |
caaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaagtccacttcaagaatagcgtcattgtcatttctaggaccaatattcaaagt |
6924268 |
T |
|
| Q |
210 |
cagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6924267 |
cagtgaatctgtattcccattaaaaattaccatacgttcggcttttgcggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcg |
6924168 |
T |
|
| Q |
310 |
tcgattaactcgtatgaccatcgagg |
335 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
6924167 |
tcgattaactcgtatgaccatcgagg |
6924142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 27529201 - 27529052
Alignment:
| Q |
186 |
atttctaggaccaatattcaaagtcagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagt |
285 |
Q |
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|||| ||||| ||| ||||||| | |||||| ||||||||||||||||||||| ||||||| || ||||||||||||||||| ||||||| ||| | |
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| T |
27529201 |
atttttaggatcaagattcaaatttagtgaacttgtattcccattaaaaattactatacgtttggtaattggggaacgaatctgagcctcttttattatt |
27529102 |
T |
|
| Q |
286 |
ctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgagg |
335 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27529101 |
cttttcgtcacttgctccaattcgtcgattaactcgtatgaccatcgagg |
27529052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 335
Target Start/End: Original strand, 36988745 - 36988794
Alignment:
| Q |
286 |
ctttccgtcatttgctccaattcgtcgattaactcgtatgaccatcgagg |
335 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| | |||||||||| |||| |
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| T |
36988745 |
ctttccatcacttgctccaattcgtcgattaagttgtatgaccattgagg |
36988794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 335
Target Start/End: Complemental strand, 30831884 - 30831566
Alignment:
| Q |
17 |
tgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcgatcaaaatc |
116 |
Q |
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|||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
30831884 |
tgggggaatgggcctgtccagttccttgaacaagtttcgttgtcgctattttacgccttagagggcgcatagatcccttaattatatctcggtcataatc |
30831785 |
T |
|
| Q |
117 |
tggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtgaa |
216 |
Q |
| |
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|| ||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||| |
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| T |
30831784 |
tgattcacgtaaaaaatttagtagaaaaaattcgtgattcaggtccagttcaggaatagcatcattgtcatttctaggaccaagattcaaagtcagtgaa |
30831685 |
T |
|
| Q |
217 |
tctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgatta |
316 |
Q |
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|||||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||| |||||| ||||||||||||| |
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| T |
30831684 |
tctgtattcctattaaatattaccatacgttcggcttctggggaacgaatctgagtctcttttgttagtcttttcgtcacttgctctaattcgtcgatta |
30831585 |
T |
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| Q |
317 |
actcgtatgaccatcgagg |
335 |
Q |
| |
|
||||||||||||||||||| |
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| T |
30831584 |
actcgtatgaccatcgagg |
30831566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 98 - 228
Target Start/End: Original strand, 47460370 - 47460500
Alignment:
| Q |
98 |
ttatatctcgatcaaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggacc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47460370 |
ttatatctcgatcaaaatctggttcgcgtaaaaaatttactagaaaaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggacc |
47460469 |
T |
|
| Q |
198 |
aatattcaaagtcagtgaatctgtattccca |
228 |
Q |
| |
|
|||||||||||||||||| |||||||||||| |
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| T |
47460470 |
aatattcaaagtcagtgactctgtattccca |
47460500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 330
Target Start/End: Original strand, 28384101 - 28384287
Alignment:
| Q |
143 |
aaaattcgtgatttaggtccacttcaggaatagcgtcattgtcatttctaggaccaatattcaaagtcagtgaatctgtattcccattaaaaattaccat |
242 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||| |||||||||||| || |
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|
| T |
28384101 |
aaaattcgtgatttaggtccagttcaggaatagcgtcattgtcatt-ctaggaccaagattcaaagttagtgaatctgtattcctattaaaaattactat |
28384199 |
T |
|
| Q |
243 |
acgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaattcgtcgattaactcgtatgaccat |
330 |
Q |
| |
|
|||||||||| | || ||||||| ||| |||||||| || ||||||||||| |||||||| ||| || ||||| | |||||||||| |
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|
| T |
28384200 |
acgttcggctcgtaggaaacgaatttgagcctcttttgataatctttccgtcacttgctccatttcatctattaagttgtatgaccat |
28384287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 11299457 - 11299504
Alignment:
| Q |
48 |
aagtttcgttgtcgctattttacgccttagagggcgcatagatccctt |
95 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
11299457 |
aagtttcgaagtcgttattttacgccttagagggtgcatagatccctt |
11299504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 208 - 331
Target Start/End: Original strand, 47448189 - 47448303
Alignment:
| Q |
208 |
gtcagtgaatctgtattcccattaaaaattaccatacgttcggcttttggggaacgaatctgaaactcttttgttagtctttccgtcatttgctccaatt |
307 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||| |
|
|
| T |
47448189 |
gtcagtgaatctgtattcccattaaaa---------cgtttggcttttggggaacgaatctgagcctcttttgttagtctttctgtcacttgctccaatt |
47448279 |
T |
|
| Q |
308 |
cgtcgattaactcgtatgaccatc |
331 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47448280 |
tgtcgattaactcgtatgaccatc |
47448303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 17 - 147
Target Start/End: Original strand, 2912825 - 2912956
Alignment:
| Q |
17 |
tgggggaatggggctgtccatttccttgagaaagtttcgttgtcgctatttt-acgccttagagggcgcatagatcccttaattatatctcgatcaaaat |
115 |
Q |
| |
|
|||||||||||| |||||| |||||||| ||||||| |||| |||||| ||| ||||||||| ||||||||||||||||||||||||| ||| ||| |
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| T |
2912825 |
tgggggaatgggaatgtccagttccttgaacaagtttcaaagtcgttatttttacgacttagagggtgcatagatcccttaattatatctcggtcataat |
2912924 |
T |
|
| Q |
116 |
ctggttcgcgtaaaaaatttactagaaaaaat |
147 |
Q |
| |
|
||||||||||||||||||||| | |||||||| |
|
|
| T |
2912925 |
ctggttcgcgtaaaaaatttaattgaaaaaat |
2912956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 335
Target Start/End: Complemental strand, 17260328 - 17260293
Alignment:
| Q |
300 |
ctccaattcgtcgattaactcgtatgaccatcgagg |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
17260328 |
ctccaattcgtcgattaactcgtatgaccatcgagg |
17260293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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