View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13539_high_12 (Length: 313)
Name: NF13539_high_12
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_12 |
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| [»] scaffold0459 (1 HSPs) |
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| [»] scaffold0366 (1 HSPs) |
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Alignment Details
Target: scaffold0459 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: scaffold0459
Description:
Target: scaffold0459; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 6387 - 6083
Alignment:
| Q |
8 |
aagcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387 |
aagcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctg |
6288 |
T |
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| Q |
108 |
atcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6287 |
atcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaat |
6188 |
T |
|
| Q |
208 |
tcttgctccgaacctgctatcatggagatcaaacacgacacgaataataactaaattactaattgttcctgaacatggttctgcagaatcattcagtggt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6187 |
tcttgctccgaacctgctatcatggagatcaaacacgacacgaataataactaaattactaattgttcctgaacatggttctgcagaatcattcagtggt |
6088 |
T |
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| Q |
308 |
aaaag |
312 |
Q |
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||||| |
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| T |
6087 |
aaaag |
6083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0366 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: scaffold0366
Description:
Target: scaffold0366; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 8 - 312
Target Start/End: Complemental strand, 6387 - 6083
Alignment:
| Q |
8 |
aagcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6387 |
aagcatagggaagaaagctagcaactctgaaatatatggaatgatgcaagcagtgtttatagaaatggataatgatcctaatgtaagcctacgccttctg |
6288 |
T |
|
| Q |
108 |
atcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6287 |
atcctcttatccttttgccaataaatatattcagcaattgttttatgttttttattatatgttcatattatattctgatctttgccctgtcctataaaat |
6188 |
T |
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| Q |
208 |
tcttgctccgaacctgctatcatggagatcaaacacgacacgaataataactaaattactaattgttcctgaacatggttctgcagaatcattcagtggt |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6187 |
tcttgctccgaacctgctatcatggagatcaaacacgacacgactaataactaaattactaattgttcctgaacatggttctgcagaatcattcagtggt |
6088 |
T |
|
| Q |
308 |
aaaag |
312 |
Q |
| |
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||||| |
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|
| T |
6087 |
aaaag |
6083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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