View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13539_high_3 (Length: 403)
Name: NF13539_high_3
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_3 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 403
Target Start/End: Original strand, 43410733 - 43411128
Alignment:
| Q |
10 |
gcaaaggcaaagatagggacaagtattgcaaacccacacagaggtgcaaacacagacaccatttgtgcactattgggatgccaatattatataacattgg |
109 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||| ||||||| ||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
43410733 |
gcaaaggcaaaaatagggacaagtattgcaaacccacaccgaggtacaaacacgaacaccgtttgtgcattattgggatgtcaatattatataacattgg |
43410832 |
T |
|
| Q |
110 |
ccagtgggacaccgagcgggtaatcatcgtttcatacatttgattgaaaattattactctctctctatgtcacataattacggagctttctgttcatttt |
209 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
43410833 |
ccattgagacaccgagcgggtaatcatcgtttcatacatttgattgaaaattattactctctctctatgtcacataattaccgagctttttgttcatttt |
43410932 |
T |
|
| Q |
210 |
gtacatgttaagaaaaaatgcataagtgaa--agagagaattagttttatgatcacaatccaatgcatggccatggattgtccgttgattctgattgcaa |
307 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
43410933 |
gtacattttaagaaaaaatgcataagtgaacgagagaaaattagttttatgatcacaatccaatgcatggccatggattgtccgttgattctgattacaa |
43411032 |
T |
|
| Q |
308 |
tccaaagagataaaataccttaaccaaacagctcaatgcatagccatggactgtctgttgatgacaaaatacaccagaaaaattttcatatgtgta |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
43411033 |
tccaaagagataaaataccttaaccaaacagctcaatgcatagccatggactgtctgttgatgacaaaatacaccagaaaatttttcatatgtgta |
43411128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 34955069 - 34955117
Alignment:
| Q |
64 |
gacaccatttgtgcactattgggatgccaatattatataacattggcca |
112 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
34955069 |
gacaccacttgtgtaccattgggataccaatgttatataacattggcca |
34955117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 37811087 - 37811135
Alignment:
| Q |
64 |
gacaccatttgtgcactattgggatgccaatattatataacattggcca |
112 |
Q |
| |
|
||||||| ||||| || |||||||| ||||| ||||||||||||||||| |
|
|
| T |
37811087 |
gacaccacttgtgtaccattgggataccaatgttatataacattggcca |
37811135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University