View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13539_high_4 (Length: 387)
Name: NF13539_high_4
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_4 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold0140 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 18144341 - 18143967
Alignment:
| Q |
1 |
atatgaatgttctattatgttacatcaacacattaatctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144341 |
atatgaatgttctattatgttacatcaacacattaatctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagt |
18144242 |
T |
|
| Q |
101 |
gcatgctcaagtacttattacctcttgggttgtaattgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144241 |
gcatgctcaagtacttattacctcttgggttgtaattgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggt |
18144142 |
T |
|
| Q |
201 |
cagaatttctttgaatatgtccttgaattcatccgagacgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144141 |
cagaatttctttgaatatgtccttgaattcatccgagacgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgt |
18144042 |
T |
|
| Q |
301 |
tcctatttatttttgtttcgaattggtcaggggctcttttgccttggaaaattataaagttacctcatggagaat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18144041 |
tcctatttatttttgtttcgaattggtcaggggctcttttgccttggaaaattataaagttacctcatggagaat |
18143967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 48185628 - 48185283
Alignment:
| Q |
30 |
acattaatctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttggg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48185628 |
acattaatctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacgtcttggg |
48185529 |
T |
|
| Q |
130 |
ttgtaattgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaatt |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
48185528 |
ttgtaattgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtctggttagaatttctttgaatatgtccttgaatt |
48185429 |
T |
|
| Q |
230 |
catccgagacgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtca |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
48185428 |
catccgagacgtgagcaaaactcagattggagaagaatatggtctgcgggttccgtttattggaactttgtttctatttatttttgtttcgaattggtca |
48185329 |
T |
|
| Q |
330 |
ggggctcttttgccttggaaaattataaagttacctcatggagaat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48185328 |
ggggctcttttgccttggaaaattataaagttacctcatggagaat |
48185283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 26842781 - 26842690
Alignment:
| Q |
130 |
ttgtaattgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtc |
221 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26842781 |
ttgttattgctatcttattaatttcaatcattctaattgttagaaatccacaaactattccaataattggtcagaatttctttgaatatgtc |
26842690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 48189586 - 48189553
Alignment:
| Q |
1 |
atatgaatgttctattatgttacatcaacacatt |
34 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
48189586 |
atatgaatgttctattatgttacatcaacacatt |
48189553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 139 - 375
Target Start/End: Complemental strand, 9294013 - 9293777
Alignment:
| Q |
139 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9294013 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
9293914 |
T |
|
| Q |
239 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293913 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
9293814 |
T |
|
| Q |
339 |
ttgccttggaaaattataaagttacctcatggagaat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9293813 |
ttgccttggaaaattataaagttacctcatggagaat |
9293777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 9292415 - 9292295
Alignment:
| Q |
1 |
atatgaatgttctattatgttacatcaacacattaatctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9292415 |
atatgaatgttctattatgttacatcaacacattaatctatgatatatctgttgtcgaagtaggtcaacatttctattggcaaataggggattttcaagt |
9292316 |
T |
|
| Q |
101 |
gcatgctcaagtacttattac |
121 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9292315 |
gcatgctcaagtacttattac |
9292295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 139 - 375
Target Start/End: Complemental strand, 24489470 - 24489234
Alignment:
| Q |
139 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489470 |
ctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgaga |
24489371 |
T |
|
| Q |
239 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489370 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctctt |
24489271 |
T |
|
| Q |
339 |
ttgccttggaaaattataaagttacctcatggagaat |
375 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24489270 |
ttgccttggaaaattataaagttacctcatggagaat |
24489234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 42 - 375
Target Start/End: Original strand, 231087 - 231420
Alignment:
| Q |
42 |
gatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaattgcta |
141 |
Q |
| |
|
|||||||| | ||| |||||||| ||||| ||||||||||||||||| | ||||||| | ||||| || ||||| || || |||||||| |||||| ||| |
|
|
| T |
231087 |
gatatatcgggtgtagaagtaggccaacacttctattggcaaataggaggttttcaaattcatgcccaggtactcatcacttcttgggtcgtaattacta |
231186 |
T |
|
| Q |
142 |
tcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaatttctttgaatatgtccttgaattcatccgagacgt |
241 |
Q |
| |
|
|||| || |||| | ||| |||| | ||||| ||||| || || || ||| |||||||| ||||||||||||||||| || || |||||| | |
|
|
| T |
231187 |
tcttgctaggttcagttgtcatagctgttcggaatccacaaaccatcccgaccgacgggcagaatttttttgaatatgtccttgagtttattcgagactt |
231286 |
T |
|
| Q |
242 |
gagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctcttttg |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||| |||||||||||||| |||||||| || |||||||| |
|
|
| T |
231287 |
gagcaaaactcagattggagaagaatatggtccctgggttccctttattggaactatgttcctttttatttttgtttcaaattggtcgggtgctctttta |
231386 |
T |
|
| Q |
342 |
ccttggaaaattataaagttacctcatggagaat |
375 |
Q |
| |
|
||||||||||||||| ||||||| ||||| |||| |
|
|
| T |
231387 |
ccttggaaaattatagagttaccccatggggaat |
231420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 37 - 205
Target Start/End: Complemental strand, 34676652 - 34676485
Alignment:
| Q |
37 |
tctatgatatatctgctgtcgaagtaggtcaacatttctattggcaaataggggattttcaagtgcatgctcaagtacttattacctcttgggttgtaat |
136 |
Q |
| |
|
||||||||||||||| ||| |||||||| ||||||| ||||||||||||| || ||| |||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34676652 |
tctatgatatatctgttgtggaagtagggaaacattttcattggcaaataggtgagttttaagtgcatactcaagtgcttattacctcttgggttgtaat |
34676553 |
T |
|
| Q |
137 |
tgctatcttattaatttcaaccattctagttgttagaaatccgcaaactattccaacgtccggtcagaa |
205 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
34676552 |
tgctatcttattaatttcaaccattctaattgttagaaatccgcaaactattcc-atgtccggtcagaa |
34676485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 363
Target Start/End: Original strand, 22965856 - 22966007
Alignment:
| Q |
211 |
ttgaatatgtccttgaattcatccgagacgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttat |
310 |
Q |
| |
|
|||||||||||||||||||||| ||| | || || |||||||| ||| |||||||||||||| |||| || | |||||||| ||||||| ||||||| |
|
|
| T |
22965856 |
ttgaatatgtccttgaattcattcgataagtaagaaaaactcaaattagagaagaatatggtatgtggatttcaattattggagctttgtttttatttat |
22965955 |
T |
|
| Q |
311 |
ttttgtttcgaattggtcaggggctcttttgccttggaaaattataaagttac |
363 |
Q |
| |
|
||||||||||||||||||| | | ||||||||| |||||||||||||||| |
|
|
| T |
22965956 |
ttttgtttcgaattggtcaaagattattttgcctt-aaaaattataaagttac |
22966007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 255 - 375
Target Start/End: Complemental strand, 25503 - 25372
Alignment:
| Q |
255 |
attggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcg-----------aattggtcaggggctcttttgcc |
343 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
25503 |
attggagaagaatatggtccttgggttccgtttattggaactttgttcctatttatttttgtttcgaatttgtttcgaattggtcaggggttcttttgcc |
25404 |
T |
|
| Q |
344 |
ttggaaaattataaagttacctcatggagaat |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25403 |
ttggaaaattataaagttacctcatggagaat |
25372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 246 - 380
Target Start/End: Complemental strand, 8868319 - 8868187
Alignment:
| Q |
246 |
aaaactcagattggagaagaatatggtccgtgggttccgtttattggaactttgttcctatttatttttgtttcgaattggtcaggggctcttttgcctt |
345 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| ||||||||||| | || | ||| ||||| ||| ||||| |||||||||||||||| ||| |
|
|
| T |
8868319 |
aaaaatcagattggagaagaatatggtcagtgggttccatttattggaaccctttt--tttttttttttttttggaatttgtcaggggctcttttgtctt |
8868222 |
T |
|
| Q |
346 |
ggaaaattataaagttacctcatggagaataatct |
380 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |
|
|
| T |
8868221 |
ggaaaattataaagttatctcatggagaattatct |
8868187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 239 - 286
Target Start/End: Complemental strand, 25719975 - 25719928
Alignment:
| Q |
239 |
cgtgagcaaaactcagattggagaagaatatggtccgtgggttccgtt |
286 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||| ||||||||||| |
|
|
| T |
25719975 |
cgtgagcaaaactcagattggggaagaatattgtccttgggttccgtt |
25719928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University