View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13539_high_5 (Length: 374)
Name: NF13539_high_5
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_5 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 16 - 374
Target Start/End: Complemental strand, 13228034 - 13227676
Alignment:
| Q |
16 |
ataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagata |
115 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13228034 |
ataccaaacattcctcgttatttatatttattcttaagcaagtcccaaaaagtccttagttgagccatcatttctatttcgtctttcgtttcgatagata |
13227935 |
T |
|
| Q |
116 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
13227934 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagaccctgctcatg |
13227835 |
T |
|
| Q |
216 |
gattaacgaaaatgtgcagaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcagcatccacta |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227834 |
gattaacgaaaatgtgcaaaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcagcatccacta |
13227735 |
T |
|
| Q |
316 |
attcggaacttaatttgaaagccatatttcgacccggacgttttcgggatgcgcctaat |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13227734 |
attcggaacttaatttgaaagccatatttcgacccggacgttttcgggatgcgcctaat |
13227676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 132 - 374
Target Start/End: Original strand, 53883670 - 53883906
Alignment:
| Q |
132 |
ttctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtg |
231 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||| |
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| T |
53883670 |
ttctttttctattgattcttttccaattat------ggatggatccatacataggtctatgtgtgtgtatagatcctgctcattgattaatgaaaatgtg |
53883763 |
T |
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| Q |
232 |
cagaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcagcatccactaattcggaacttaattt |
331 |
Q |
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|| ||| |||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||| |||||| |
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| T |
53883764 |
caaaagatctatttgcctctgccattctatgagtctcttcctttttgtgtatggcatagccactccctttggcagcattcactaattcggaacataattt |
53883863 |
T |
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| Q |
332 |
gaaagccatatttcgacccggacgttttcgggatgcgcctaat |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53883864 |
gaaagccatatttcgacccggacgttttcgggatgcgcctaat |
53883906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 40 - 374
Target Start/End: Complemental strand, 42680336 - 42680008
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattcttttt |
139 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42680336 |
tatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctattttgtctttcgtttccatagatatatcgattaattccgattcttttt |
42680237 |
T |
|
| Q |
140 |
ctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatggattaacgaaaatgtgcagaagct |
239 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
42680236 |
ctattgattcttttccaattat------gtatggatccatacataggtctacgtgtgtatatagatcctactcatggattaacgaaaatgtgcaaaagct |
42680143 |
T |
|
| Q |
240 |
ctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccctttggcagcatccactaattcggaacttaatttgaaagcca |
339 |
Q |
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|||||||| |||||||||||| ||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
42680142 |
ctatttgcttctgccattctacgagtctcttcctttttgtgtatggcatcgtcactccctttagcagcatccactaattcggaacttaatttgagagcca |
42680043 |
T |
|
| Q |
340 |
tatttcgacccggacgttttcgggatgcgcctaat |
374 |
Q |
| |
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|||||||||| |||||||||||| ||||||||||| |
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| T |
42680042 |
tatttcgacctggacgttttcggtatgcgcctaat |
42680008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 47522820 - 47522608
Alignment:
| Q |
16 |
ataccaaaaattcctcgttatttatatttattcttaagcaagtccccaaaagtgcttagttgagccatcatttctatttcgtctttcgtttcgatagata |
115 |
Q |
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|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47522820 |
ataccaaacattcctggttatttatatttattcttaagcaagtccccaaaagtgtttagttgagccatcatttctatttcgtctttcgtttcgataaata |
47522721 |
T |
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| Q |
116 |
tatcgattaattccgattctttttctattgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtatatagatcctgctcatg |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
47522720 |
tatcgattaattccgattctttttctatcgattcttttccaattataattatgtatggatccatacataggtctatgtgtgtacatagatcctactcatg |
47522621 |
T |
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| Q |
216 |
gattaacgaaaat |
228 |
Q |
| |
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||||||||||||| |
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| T |
47522620 |
gattaacgaaaat |
47522608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 200 - 367
Target Start/End: Complemental strand, 192063 - 191896
Alignment:
| Q |
200 |
atagatcctgctcatggattaacgaaaatgtgcagaagctctatttgcctctgccattctatgagtctcttgctttttgcgtatggcatcgccactccct |
299 |
Q |
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|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| | ||||||||| |
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| T |
192063 |
atagattctgttcatggattaacgaaaatgtgcaagagctctatttgcctctgccattctatgagtcgcttcctttttgcgtatggcacccccactccct |
191964 |
T |
|
| Q |
300 |
ttggcagcatccactaattcggaacttaatttgaaagccatatttcgacccggacgttttcgggatgc |
367 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
191963 |
ttggcagcatctactaattcggaacttaatttgaaagccatatttcgacccggacgcttttgggatgc |
191896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 161
Target Start/End: Original strand, 35934647 - 35934768
Alignment:
| Q |
40 |
tatttattcttaagcaagtccccaaaagt-gcttagttgagccatcatttctatttcgtctttcgtttcgatagatatatcgattaattccgattctttt |
138 |
Q |
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||||||||||||||||||||| ||||||| | |||||| |||||||| |||||||| |||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
35934647 |
tatttattcttaagcaagtcctcaaaagttggttagttaagccatcaattctattt-gtctttcgtttcgatagatatatctattaattatgattatttt |
35934745 |
T |
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| Q |
139 |
tctattgattcttttccaattat |
161 |
Q |
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||||||||||||||||||||||| |
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| T |
35934746 |
tctattgattcttttccaattat |
35934768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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