View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13539_high_7 (Length: 352)
Name: NF13539_high_7
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_7 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 9 - 352
Target Start/End: Complemental strand, 1055706 - 1055363
Alignment:
| Q |
9 |
agcagagaaactaaaaccaggagtagttacaactcttctactccgttccgcttcaatatctttcactctctgttcccaaatcacatcagattgaatctca |
108 |
Q |
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| T |
1055706 |
agcagagaaactaaaaccaggagtagttacaactcttctactccgttccgcttcaatatctttcactctctgttcccaaatcacatcagattgaatctca |
1055607 |
T |
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| Q |
109 |
tctttcataacagcaccaattctctctttctcattgtacattaccgttgagttcgaattcgaattctcgaacatcaccaccggagtcgattcgcggctgt |
208 |
Q |
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| T |
1055606 |
tctttcataacagcaccaattctctctttctcatcgtacattaccgttgagttcgaattcgaattctcgaacatcaccaccggagtcgattcgcggctgt |
1055507 |
T |
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| Q |
209 |
tgatgagacgtgaagctatacctaagaaaagctcgccggtggcaacggcgaaggatttcttttcttccggcggaggaggagaaggagttgtggagtgttg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1055506 |
tgatgagacgtgaagctatacctaagaaaagctcgccggtggcaacggcgaaggatttcttttcttccggcggaggaggagaaggagttgtggagtgttg |
1055407 |
T |
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| Q |
309 |
ttgaacgcgtggtggataattgaattgagtgcgcatggggagaa |
352 |
Q |
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| T |
1055406 |
ttgaacgcgtggtggataattgaattgagtgcgcgtggggagaa |
1055363 |
T |
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