View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13539_high_8 (Length: 337)
Name: NF13539_high_8
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 14 - 337
Target Start/End: Complemental strand, 47275434 - 47275111
Alignment:
| Q |
14 |
gaacctgtggtgttggagaaggaggagcagcgtctacaggagacagggctgaggctttattggccaacttgcataaagccacagcaccatcaagttgctg |
113 |
Q |
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| T |
47275434 |
gaacctgtggtgttggagaaggaggagcagcgtctacaggagatagggctgaggctttattggccaacttgcataaagccacagcaccatcaagttgctg |
47275335 |
T |
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| Q |
114 |
tttggagctggatgagctgagaagactgataagcaactcaagacctatatggaaagatgcttaactttgaaatgtagcaagtacaaaaaggaatttgtac |
213 |
Q |
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| T |
47275334 |
tttggagctggatgagctgagaagactgataagcaactcaagacctatatggaaaaatgcttaactttgaaatgtaacaagtacaaaaaggaatttgtac |
47275235 |
T |
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| Q |
214 |
agcatgaaacaacagtaatcaaacccatgaaagcattttacgaagatgcatttaccatggtgttcaataaaaattcttctttgatcatctgcagggcaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47275234 |
agcatgaaacaacagtaatcaaacccatgaaagcattttacgaagatgcatttaccatggtgttcaataaaaattcttctttgatcatctgcagggcaaa |
47275135 |
T |
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| Q |
314 |
gatgtgcaagaaccaacgcaattc |
337 |
Q |
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| T |
47275134 |
gatgtgcaagaaccaacgcaattc |
47275111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 678883 - 678981
Alignment:
| Q |
15 |
aacctgtggtgttggagaaggaggagcagcgtctacaggagacagggctgaggctttattggccaacttgcataaagccacagcaccatcaagttgctg |
113 |
Q |
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|||||| |||||||| || ||||||||||| |||||||||||||| | ||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
678883 |
aacctgaggtgttggggatggaggagcagcatctacaggagacagagtcatagctttgttggccaacttgaataaagccacagcaccatcaagttgctg |
678981 |
T |
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