View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13539_high_9 (Length: 336)
Name: NF13539_high_9
Description: NF13539
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13539_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 58 - 324
Target Start/End: Original strand, 18062005 - 18062277
Alignment:
| Q |
58 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactctcactatccgtttcaaatctgacttcaaatcta |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
18062005 |
ttctaaaatgtcactagccttttggagcttatcatcatcattgccactatccttttctttatcactatca------gtttcaaatctgacttcaaatcta |
18062098 |
T |
|
| Q |
158 |
acatcaaatctgtnnnnnnntctgtaatcaaatctataactggacttgtggaatttttcatttttatcctcctcctgcgga------------nnnnnnn |
245 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18062099 |
acatcaaatctgtaatcaaatctgtaatcaaatctataactggacttgtgtaatttttcatttttatcctcctcctgcggattattctcattgttattct |
18062198 |
T |
|
| Q |
246 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
324 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18062199 |
caatgatattatgtataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
18062277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 246 - 324
Target Start/End: Original strand, 27008459 - 27008537
Alignment:
| Q |
246 |
caatgatattctctataatggaactatcaataccgatttcagaaagcatataaccttcaatacaactattaatgatatt |
324 |
Q |
| |
|
|||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27008459 |
caatgatattatgtataatggaactatcaataaagatttcagaaagcatataaccttcaatacaactattaatgatatt |
27008537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 98
Target Start/End: Original strand, 18061716 - 18061757
Alignment:
| Q |
58 |
ttctaaaatgtcactagccttttgg-agcttatcatcatcat |
98 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18061716 |
ttctaaaatgtcactagccttttggtagcttatcatcatcat |
18061757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 27008402 - 27008434
Alignment:
| Q |
201 |
acttgtggaatttttcatttttatcctcctcct |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27008402 |
acttgtggaatttttcatttttatcctcctcct |
27008434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 312
Target Start/End: Complemental strand, 9195603 - 9195565
Alignment:
| Q |
274 |
aataccgatttcagaaagcatataaccttcaatacaact |
312 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9195603 |
aataccgatttcagaaaggatataaccttcaatacaact |
9195565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University