View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_high_3 (Length: 492)
Name: NF1353_high_3
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 78 - 483
Target Start/End: Complemental strand, 9149430 - 9149035
Alignment:
| Q |
78 |
aatgtaagggctaagttttctttgacttacactttcaaaaaataagtcagaggcaaatgaaagtaacaatttattgacaaattttaggttcagtacaggt |
177 |
Q |
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| T |
9149430 |
aatgtaagggctaagttttttttgacttacactttcaaaaaataagtcagaggcaaatgaaagtaa---tttattgacaaattttaggttcagtacaggt |
9149334 |
T |
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| Q |
178 |
gtatattgaatcatcagtttcagattcttatatcattggtacaataatgtgtcataactcataaagaatgatttgcacctnnnnnnnncatttttgctcc |
277 |
Q |
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| T |
9149333 |
gtatattgaatcatcagtttcagattcttatatcattggtacaataatgtgtcataa-------agaatgatttgcacctaaataaaacatttttgctcc |
9149241 |
T |
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| Q |
278 |
atgagtacaatatataaatagtaatgaacaaaacaaatgaaagaatgaatgaatttataatcactaatgaccaagtttaatttcaatgagaatcagcttg |
377 |
Q |
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| T |
9149240 |
atgagtacaatatataaatagtaatgaacaaaacaaatgaaagaatgaatgaatttataatcactaatgaccaagtttaatttcaatgagaatcagcttg |
9149141 |
T |
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| Q |
378 |
ataatgttgtgcaaggcttgaagaaccaaaacatgtccaaggcttttgtttctcttccatcagagattgtaatacttttgttgttttgtgctggtgagtc |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9149140 |
ataatgttgtgcaaggcttgaagaaccaaaacatgtccaaggcttttgtttctcttccatcagagattgtaatacttttgttgttttgtgctggtgagtc |
9149041 |
T |
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