View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1353_low_1 (Length: 496)
Name: NF1353_low_1
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 6 - 338
Target Start/End: Original strand, 39619154 - 39619486
Alignment:
| Q |
6 |
agcaccacagagatctcgacgaacataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaa |
105 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39619154 |
agcaacacaaagatctcgacgaacataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaa |
39619253 |
T |
|
| Q |
106 |
acacatgaaattgatggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39619254 |
acacatgaaattgatggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcat |
39619353 |
T |
|
| Q |
206 |
caccggagagatggaaggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgc |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39619354 |
caccggagagatggaaggtcaccggaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaatgatcgc |
39619453 |
T |
|
| Q |
306 |
aatttaaatggtttgctagatctgctactaaaa |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39619454 |
aatttaaatggtttgctagatctgctactaaaa |
39619486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 39619517 - 39619577
Alignment:
| Q |
375 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtccttaattgaagacaatg |
435 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
39619517 |
ggatgtgaggaagaataagtggaacacgttttccaaattctgtccttaattgaagacaatg |
39619577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 338
Target Start/End: Complemental strand, 17516843 - 17516516
Alignment:
| Q |
11 |
cacagagatctcgacgaacataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacaca |
110 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17516843 |
cacacagatctcgacaaacataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacagatctgcagcaaactaaaaagctagaaacaca |
17516744 |
T |
|
| Q |
111 |
tgaaattgatggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccg |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17516743 |
tgaaattgatggagcaaagagagggaagacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccg |
17516644 |
T |
|
| Q |
211 |
gagagatggaaggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaattt |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17516643 |
gagagatggaaggtcaccggaaaagcgtggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaattt |
17516544 |
T |
|
| Q |
311 |
aaatggtttgctagatctgctactaaaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17516543 |
aaatggtttgctagatctgctactaaaa |
17516516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 17516491 - 17516445
Alignment:
| Q |
375 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
421 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
17516491 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
17516445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 11 - 338
Target Start/End: Original strand, 52402501 - 52402828
Alignment:
| Q |
11 |
cacagagatctcgacgaacataacagaacccaccggaaagaaccaaaccggaaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacaca |
110 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52402501 |
cacacagatctcgacgaacataacagaacccaccggaaagaaccaaatcggaaaaaacaggaggaacagatctgcagcaaactaaaaagctagaaacaca |
52402600 |
T |
|
| Q |
111 |
tgaaattgatggagcaaagagagggaaaacgaggatctgaaacggatccacaacaagaacagagaaaaacgatcaaaaaagcctcatcggagcatcaccg |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52402601 |
tgaaattgatggagcaaagagagagaaaacgaggatctgaaacggatccacaacaagaacaaagaaaaacgatcaaaaaagcctcatcggagcatcaccg |
52402700 |
T |
|
| Q |
211 |
gagagatggaaggtcaccggaaaagcgcggatgaggtgagagaagcgagaaccccggtgtcatattttcttaactgattatgttttaatgatcgcaattt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
52402701 |
gagagatggaaggtcaccggaaaagcgcggatgaggtgagagaagcgagaactccggtgtcatattttcttaactgattatgttttaataatcgcaattt |
52402800 |
T |
|
| Q |
311 |
aaatggtttgctagatctgctactaaaa |
338 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
52402801 |
aaatggtttgctagatctgctactaaaa |
52402828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 52402853 - 52402899
Alignment:
| Q |
375 |
ggatgtgaggaagaataagtggaacacattatccaaattctgtcctt |
421 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||||||||||||||| |
|
|
| T |
52402853 |
ggatgtgaggaagaagaagtggaacacgttttccaaattctgtcctt |
52402899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 24610560 - 24610426
Alignment:
| Q |
49 |
agaaccaaaccgg-aaaacacaggaggaacaaatctgcagcaaactaaaaagctagaaacacatgaaattgatggagcaaagagagggaaaacgaggatc |
147 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
24610560 |
agaaccaaaccgggaaaacacaggaggaacatatctgcagcaaactaaaaagctagaaacacttgaaattgatggagcaaagatagggaaaacatggatt |
24610461 |
T |
|
| Q |
148 |
tgaaacggatccacaacaagaacagagaaaaacga |
182 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||| |
|
|
| T |
24610460 |
tgaaacggatccacaaaaagaatagagaaaaacga |
24610426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University