View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1353_low_10 (Length: 320)

Name: NF1353_low_10
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1353_low_10
NF1353_low_10
[»] chr7 (2 HSPs)
chr7 (144-320)||(33510329-33510505)
chr7 (98-128)||(33510279-33510309)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 144 - 320
Target Start/End: Original strand, 33510329 - 33510505
Alignment:
Q  144 gttaagcagaggagattctagttttggtaaaatgaaaaaacatacataggatcaagtataagataggttccaccttccatgctttgagtggctagtatgg 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33510329 gttaagcagaggagattctagttttggtaaaatgaaaaaacatacataggatcaagtataagataggttccaccttccatgctttgagtggctagtatgg 33510428  T
Q  244 ttgagaaatcaaaagatgaagagtgctacagagctagacctttatatttgttgcttcctttctgcattatataagtt 320  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33510429 ttgagaaatcaaaagatgaagagtgctacagagctagacctttatatttgttgcttcctttctgcattatataagtt 33510505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 128
Target Start/End: Original strand, 33510279 - 33510309
Alignment:
Q  98 tttgacacccggtgtcgactgatcctagcta 128  Q
    |||||||||||||||||||||||||||||||    
T  33510279 tttgacacccggtgtcgactgatcctagcta 33510309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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