View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_11 (Length: 297)
Name: NF1353_low_11
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 3e-88; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 10009625 - 10009449
Alignment:
| Q |
67 |
aagaacaagtcgtaaaagaatttgtaataacatttaccataaaaaattgttaatgaatatctataaagatttacaataacttaatgtattcaaaaaattt |
166 |
Q |
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| T |
10009625 |
aagaacaagttgtaaaagaatttgtaataacatttaccataaaaaattgttaatgaatatctataaagatttacaataacttaatgtattcaaaaaattt |
10009526 |
T |
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| Q |
167 |
atattttctcattcaaatgtaagtacttcaacgtttgggattcttaatggaaatttttgtgaaattcctaatggtct |
243 |
Q |
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| T |
10009525 |
atattttctcattcaaatgtaagtccttcaacgtttggaattcttaatggaaatttttgtgaaattcctaatggtct |
10009449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 41324826 - 41324772
Alignment:
| Q |
190 |
tacttcaacgtttgggattcttaatggaaattt-ttgtgaaattcctaatggtct |
243 |
Q |
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| T |
41324826 |
tacttcaatgtttgggattcttaatggaaatttgtagtgaaatttctaatggtct |
41324772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 41324944 - 41324895
Alignment:
| Q |
84 |
gaatttgtaataacatttaccataaaaaattgttaatgaatatctataaa |
133 |
Q |
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|||| |||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
41324944 |
gaatgtgtaataacatttaccataaaaaagagttcatgaatatctataaa |
41324895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 47249499 - 47249552
Alignment:
| Q |
190 |
tacttcaacgtttgggattcttaatggaaatttttgtgaaattcctaatggtct |
243 |
Q |
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| T |
47249499 |
tacttcaacgtttgggattcttaatggaaattgcagtaaaatttctaatggtct |
47249552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 47249386 - 47249435
Alignment:
| Q |
84 |
gaatttgtaataacatttaccataaaaaattgttaatgaatatctataaa |
133 |
Q |
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|||| ||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
47249386 |
gaatgtgtaataacatttaccatacaaaagagttcatgaatatctataaa |
47249435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 20905469 - 20905415
Alignment:
| Q |
190 |
tacttcaacgtttgggattcttaatggaaattt-ttgtgaaattcctaatggtct |
243 |
Q |
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|
||||||||||||||||||||||||||||||||| | || ||||| |||||||||| |
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|
| T |
20905469 |
tacttcaacgtttgggattcttaatggaaatttgtagtaaaatttctaatggtct |
20905415 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 20905588 - 20905539
Alignment:
| Q |
84 |
gaatttgtaataacatttaccataaaaaattgttaatgaatatctataaa |
133 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||||||||||||||| |
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|
| T |
20905588 |
gaatgtgtaataacatttaccataaaaaagagttcatgaatatctataaa |
20905539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 42309402 - 42309348
Alignment:
| Q |
190 |
tacttcaacgtttgggattcttaatggaaattt-ttgtgaaattcctaatggtct |
243 |
Q |
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|
||||||||||||||||||||| ||||||||||| | || ||||| |||||||||| |
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|
| T |
42309402 |
tacttcaacgtttgggattctcaatggaaatttgtagtaaaatttctaatggtct |
42309348 |
T |
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