View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_12 (Length: 290)
Name: NF1353_low_12
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 16309041 - 16309262
Alignment:
| Q |
1 |
ccaaaacaacaatccacattggcttcttcatctgaggacggtgtagaactggagatccaagcaatatctccatatcgcccatgcttaaacgccaaaattt |
100 |
Q |
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| T |
16309041 |
ccaaaacaacaatccacattggcttcttcatctgaggacggtgtagaactggagatccaagcaatatctccatatcgcccatgcttaaacgccaaaattt |
16309140 |
T |
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| Q |
101 |
cgctgtcttcatctatgccaatgaatcaatcacaaatttcacctccaaaaaatcttgttatcattcaaatcaatagcaatagccagcaagaaatcttcaa |
200 |
Q |
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| T |
16309141 |
cgctgtcttcatctatgccaatgaatcaatcacaaatttcacctccaaaaaatcttgttatcattcaaatcaatagcaatagccagcaagaaatcttcaa |
16309240 |
T |
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| Q |
201 |
tgaattcaaaatcatacacaaa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
16309241 |
tgaattcaaaatcatacacaaa |
16309262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 116
Target Start/End: Original strand, 16300649 - 16300754
Alignment:
| Q |
5 |
aacaacaatccacattggcttcttcatctgaggacggtgtagaactggagatccaagcaatatctccatatcgcccatgcttaaacgccaaaatttcgct |
104 |
Q |
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|||||||||||||||||||||||||||| ||||||||| | || |||||| |||| |||| |||||||||| |||||||||| |||||||| ||| |
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| T |
16300649 |
aacaacaatccacattggcttcttcatcggaggacggtat----ct--agatccgggcaagatctgcatatcgcccgtgcttaaacggcaaaattttgct |
16300742 |
T |
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| Q |
105 |
gtcttcatctat |
116 |
Q |
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| T |
16300743 |
gtcttcatctat |
16300754 |
T |
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