View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_13 (Length: 285)
Name: NF1353_low_13
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 31214084 - 31213925
Alignment:
| Q |
67 |
aacacaccgtgataatgagatcttgattttt-gtagtactaatatatttcttccaaatattgtttttcagcaaa-----ggagtgttctatttagttaca |
160 |
Q |
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| T |
31214084 |
aacacaccatgataatgagatcttgattttttgtagtactaatatatttcttccaaatattgtttttcagcaaattaaaggagtgttctatttagttaca |
31213985 |
T |
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| Q |
161 |
taaacttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataat |
221 |
Q |
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| T |
31213984 |
taaa-ttattataatttttaacaatttgcagttttccagtacaaccccacaaacttataat |
31213925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 31201545 - 31201406
Alignment:
| Q |
67 |
aacacaccgtgataatgagatcttgatttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaact |
166 |
Q |
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| T |
31201545 |
aacacaccatgataatgagatcttggttttttt-gtagtaatatagttcttccaaatattgtttttcagcaaaggagtgttctatttagttacatgaact |
31201447 |
T |
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| Q |
167 |
tattataattttt-aacaatttgcagttttccagtacaacc |
206 |
Q |
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| T |
31201446 |
tattataatttttgaacaatttgcagttttccattacaacc |
31201406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 13605671 - 13605533
Alignment:
| Q |
67 |
aacacaccgtgataatgagatcttgatttttgtagtactaatatatttcttccaaatattgtttttcagcaaaggagtgttctatttagttacataaact |
166 |
Q |
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| T |
13605671 |
aacacaccatgataatgagatctcgattttt-ta-tagtaatatcgttcctccaaatattgtttttcagcaaaggagcgttctatttaattacatgaact |
13605574 |
T |
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| Q |
167 |
tattataattttt-aacaatttgcagttttccagtacaacc |
206 |
Q |
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||||||||||||| || |||||||||||||||| ||||||| |
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| T |
13605573 |
tattataatttttgaataatttgcagttttccattacaacc |
13605533 |
T |
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