View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_16 (Length: 251)
Name: NF1353_low_16
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 241
Target Start/End: Original strand, 14223116 - 14223353
Alignment:
| Q |
4 |
gtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttg |
103 |
Q |
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| T |
14223116 |
gtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttg |
14223215 |
T |
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| Q |
104 |
aggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgcggactatgg |
203 |
Q |
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| T |
14223216 |
aggtctaggttttcttagatcacaatttgattgcccaaaattgttgtcgatagcagaaggccaaaaatacgccatttaaacattccattgcggactatgg |
14223315 |
T |
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| Q |
204 |
caccaccgccgtgggttactcttcacaaattgcctatg |
241 |
Q |
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| T |
14223316 |
caccaccgccgtggtttactcttcacaaattgcctatg |
14223353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 22 - 194
Target Start/End: Original strand, 14227340 - 14227512
Alignment:
| Q |
22 |
tattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag |
121 |
Q |
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| T |
14227340 |
tattcattttgatgattgctggatgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag |
14227439 |
T |
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| Q |
122 |
atcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgc |
194 |
Q |
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| T |
14227440 |
atcacactttgattgccgataagtgtttttgatggctgaaggccaaaaatccgtcatataaacatgccattgc |
14227512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 4 - 154
Target Start/End: Original strand, 14229637 - 14229784
Alignment:
| Q |
4 |
gtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttg |
103 |
Q |
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| T |
14229637 |
gtgctatagagataatataa---attttgatggttgttgggtatctttcacttgactttctcctttattaggacaatgtgtctttgtagtttgattctcg |
14229733 |
T |
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| Q |
104 |
aggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgat |
154 |
Q |
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| T |
14229734 |
aggtttaggtttgttttgatcactctttgattccccgaaactgttctcgat |
14229784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 17355831 - 17355786
Alignment:
| Q |
157 |
cggaaggccaaaaatacgccatttaaacattccattgcggactatg |
202 |
Q |
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| T |
17355831 |
cggaaggccaaaaattcgccatataaacatgccattgcggcctatg |
17355786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 41006903 - 41006851
Alignment:
| Q |
158 |
ggaaggccaaaaatacgccatttaaacattccattgcggactatggcaccacc |
210 |
Q |
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| T |
41006903 |
ggaaggccagaagtacgccatataaacatgccattgtggcctatggcaccacc |
41006851 |
T |
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