View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_17 (Length: 234)
Name: NF1353_low_17
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 50808745 - 50808630
Alignment:
| Q |
19 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50808745 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
50808646 |
T |
|
| Q |
119 |
cttttacgatgtatcg |
134 |
Q |
| |
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|||||||||||||||| |
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| T |
50808645 |
cttttacgatgtatcg |
50808630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 50867117 - 50867232
Alignment:
| Q |
19 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50867117 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
50867216 |
T |
|
| Q |
119 |
cttttacgatgtatcg |
134 |
Q |
| |
|
|||||||||||||||| |
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| T |
50867217 |
cttttacgatgtatcg |
50867232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 19053825 - 19053939
Alignment:
| Q |
19 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
19053825 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcgtatattttag |
19053924 |
T |
|
| Q |
119 |
cttttacgatgtatc |
133 |
Q |
| |
|
|||||| |||||||| |
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| T |
19053925 |
cttttatgatgtatc |
19053939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 2685499 - 2685385
Alignment:
| Q |
19 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
2685499 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcctatattttag |
2685400 |
T |
|
| Q |
119 |
cttttacgatgtatc |
133 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
2685399 |
cttttatgatgtatc |
2685385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 133
Target Start/End: Original strand, 5477815 - 5477929
Alignment:
| Q |
19 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
5477815 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcctatattttag |
5477914 |
T |
|
| Q |
119 |
cttttacgatgtatc |
133 |
Q |
| |
|
|||||| |||||||| |
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|
| T |
5477915 |
cttttatgatgtatc |
5477929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 45008923 - 45008809
Alignment:
| Q |
19 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttaatatttggtttattctttcgtatattttag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
45008923 |
ttgtcatctacatgtctactactcatattgccgtaacaaaaataggcttgacaacaaatatgttaatttcatatttggtttattctttcctatattttag |
45008824 |
T |
|
| Q |
119 |
cttttacgatgtatc |
133 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
45008823 |
cttttatgatgtatc |
45008809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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