View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_20 (Length: 218)
Name: NF1353_low_20
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 17446169 - 17445977
Alignment:
| Q |
17 |
aattcaaaccttaatgaaactaataatttcaacatatgaacaacagagaattacacaaaattcagtcctcatatattcaatacagatacagatcagtaaa |
116 |
Q |
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| T |
17446169 |
aattcaaaccttaatgaaactaataatttcaacatatgaacaacagagaattacacaaaattcagtcctcatgtattcaatacagatacagatcggtaaa |
17446070 |
T |
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| Q |
117 |
atgtgtccgcgcctaatcaacattcggttattatgaagaaccagatttctgtgtcaaaattgatctcactctgccgcatacttcttcctatga |
209 |
Q |
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| T |
17446069 |
atgtgtccgcgcctaatcaacattcggttattatgaagaaccagatttctgtttcaaaattgatctcactctgccgcatacttcttcctatga |
17445977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 128; Significance: 2e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 34 - 209
Target Start/End: Original strand, 33414051 - 33414226
Alignment:
| Q |
34 |
aactaataatttcaacatatgaacaacagagaattacacaaaattcagtcctcatatat--tcaatacagatacagatcagtaaaatgtgtccgcgccta |
131 |
Q |
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| T |
33414051 |
aactaataatttcaacaca--aacaacagagaattacacaaaattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgccta |
33414148 |
T |
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| Q |
132 |
atcaacattcggttattatgaagaaccagatttctgtgtcaaaattgatctcactctgccgcatacttcttcctatga |
209 |
Q |
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| T |
33414149 |
atcaacatttggttattatgaagaagcagatttctgtttcaaaattggtctcactctgccgcatacttcttcctatga |
33414226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 64 - 209
Target Start/End: Original strand, 33351174 - 33351320
Alignment:
| Q |
64 |
gaattacacaaaattcagtcctca--tatattcaatacagatacagatcagtaaaatgtgtccgcgcctaatcaacattcggttattatgaagaaccaga |
161 |
Q |
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| T |
33351174 |
gaattacacaaaattcagtcctcaagtaaattcaatac---tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaaga |
33351270 |
T |
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| Q |
162 |
tttctgtgt--caaaattgatctcactctgccgcatacttcttcctatga |
209 |
Q |
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||||||| | |||||||||||||||| || |||||||||||||||||| |
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| T |
33351271 |
tttctgttttcaaaaattgatctcactccgcagcatacttcttcctatga |
33351320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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