View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1353_low_21 (Length: 215)

Name: NF1353_low_21
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1353_low_21
NF1353_low_21
[»] chr8 (3 HSPs)
chr8 (1-81)||(15151382-15151462)
chr8 (10-79)||(19442474-19442543)
chr8 (10-79)||(19578625-19578694)
[»] chr2 (6 HSPs)
chr2 (5-79)||(24578704-24578778)
chr2 (5-79)||(1644688-1644762)
chr2 (5-75)||(3563626-3563696)
chr2 (5-79)||(17628291-17628365)
chr2 (5-79)||(17673362-17673436)
chr2 (10-79)||(19569665-19569734)
[»] chr1 (3 HSPs)
chr1 (5-79)||(2900486-2900560)
chr1 (5-79)||(27908379-27908453)
chr1 (11-71)||(28538590-28538650)
[»] chr4 (2 HSPs)
chr4 (5-76)||(17405099-17405170)
chr4 (5-79)||(2946738-2946812)
[»] chr5 (1 HSPs)
chr5 (28-79)||(13502392-13502443)
[»] chr3 (1 HSPs)
chr3 (5-61)||(9021746-9021802)


Alignment Details
Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 15151382 - 15151462
Alignment:
Q  1 aacgaattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacatat 81  Q
    |||||||||||||||||| ||||||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||||||    
T  15151382 aacgaattggctctaagctaggatccatattccagaatctatgcttcactcgacaagtttaattaactaaagacaacatat 15151462  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 19442474 - 19442543
Alignment:
Q  10 gctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    ||||||||  || ||||||||||||| ||||   ||||||||||||| ||||||||||||||||||||||    
T  19442474 gctctaagttagaatccatgttccagagtctggacttcactcgacaagtttaattaactaaagacaacat 19442543  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 19578625 - 19578694
Alignment:
Q  10 gctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    ||||||||  || ||||||||||||| ||||   ||||||||||||| ||||||||||||||||||||||    
T  19578625 gctctaagttagaatccatgttccagagtctggacttcactcgacaagtttaattaactaaagacaacat 19578694  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 24578704 - 24578778
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||||| || ||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||    
T  24578704 aattagctctaagctagaatccatgttccagagtctaggtttcactcgacaaatttaattaactaaagacaacat 24578778  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 1644688 - 1644762
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||||| |||||||||||| ||| |||||  |||| |||||||| ||||||||||||||||||||||    
T  1644688 aattagctctaagctaggatccatgtttcagagtctagacttcgctcgacaagtttaattaactaaagacaacat 1644762  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 3563626 - 3563696
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagaca 75  Q
    |||| ||||||||| ||||||||||||| ||  ||||  ||||||||||||| ||||||||||||||||||    
T  3563626 aattagctctaagctaggatccatgttcaagactctagacttcactcgacaagtttaattaactaaagaca 3563696  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 17628365 - 17628291
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||||| ||||||||||||| || |||||||||| | | ||||| ||||||||||||||| ||||||    
T  17628365 aattagctctaagctaggatccatgttcaagagtctatgctttattggacaagtttaattaactaaaggcaacat 17628291  T

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Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 17673436 - 17673362
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||||| ||||||||||||| || |||||||||| | | ||||| ||||||||||||||| ||||||    
T  17673436 aattagctctaagctaggatccatgttcaagagtctatgctttattggacaagtttaattaactaaaggcaacat 17673362  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 79
Target Start/End: Original strand, 19569665 - 19569734
Alignment:
Q  10 gctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    ||||||||| ||||||||||||| |  ||||| | |||||||||| | ||||||||||||||||||||||    
T  19569665 gctctaagctaggatccatgttcgaaagtctaggtttcactcgactagtttaattaactaaagacaacat 19569734  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 2900486 - 2900560
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||||| |||||||||||| ||  |||||  ||||||||||||| ||||||||||||||||||||||    
T  2900486 aattagctctaagctaggatccatgttacaaagtctagacttcactcgacaagtttaattaactaaagacaacat 2900560  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 27908379 - 27908453
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||||| |||||||||||||||   ||||  |||||||| |||| ||||||||||||||||||||||    
T  27908379 aattagctctaagctaggatccatgttccaaaatctagacttcactctacaagtttaattaactaaagacaacat 27908453  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 28538590 - 28538650
Alignment:
Q  11 ctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaa 71  Q
    |||||||| |||||||||||||  | ||||| |||||||| ||||| ||||||||||||||    
T  28538590 ctctaagctaggatccatgttcaggagtctaggcttcacttgacaagtttaattaactaaa 28538650  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 17405170 - 17405099
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaa 76  Q
    |||| ||||||||  |||||||||||||||   |||| |||||||||||||| |||||||||||||||||||    
T  17405170 aattagctctaaggtaggatccatgttccaaaatctaggcttcactcgacaagtttaattaactaaagacaa 17405099  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 79
Target Start/End: Original strand, 2946738 - 2946812
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||| ||||||| | | |||| |||||| || ||||| |||||||||||||| |||||||||||||| |||||||    
T  2946738 aattagctctaaactatgatctatgttctagagtctaggcttcactcgacaattttaattaactaaaaacaacat 2946812  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 13502443 - 13502392
Alignment:
Q  28 tgttccagtgtctatgcttcactcgacaaatttaattaactaaagacaacat 79  Q
    |||||||  ||||| ||||||||| |||| ||||||||||||||||||||||    
T  13502443 tgttccaaagtctaggcttcactctacaagtttaattaactaaagacaacat 13502392  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 9021802 - 9021746
Alignment:
Q  5 aattggctctaagccaggatccatgttccagtgtctatgcttcactcgacaaattta 61  Q
    |||| ||||||||| |  ||||||||||||| ||||| |||||||||||||| ||||    
T  9021802 aattagctctaagctataatccatgttccagagtctaggcttcactcgacaagttta 9021746  T

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