View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1353_low_3 (Length: 492)
Name: NF1353_low_3
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 78 - 483
Target Start/End: Complemental strand, 9149430 - 9149035
Alignment:
| Q |
78 |
aatgtaagggctaagttttctttgacttacactttcaaaaaataagtcagaggcaaatgaaagtaacaatttattgacaaattttaggttcagtacaggt |
177 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9149430 |
aatgtaagggctaagttttttttgacttacactttcaaaaaataagtcagaggcaaatgaaagtaa---tttattgacaaattttaggttcagtacaggt |
9149334 |
T |
|
| Q |
178 |
gtatattgaatcatcagtttcagattcttatatcattggtacaataatgtgtcataactcataaagaatgatttgcacctnnnnnnnncatttttgctcc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
9149333 |
gtatattgaatcatcagtttcagattcttatatcattggtacaataatgtgtcataa-------agaatgatttgcacctaaataaaacatttttgctcc |
9149241 |
T |
|
| Q |
278 |
atgagtacaatatataaatagtaatgaacaaaacaaatgaaagaatgaatgaatttataatcactaatgaccaagtttaatttcaatgagaatcagcttg |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9149240 |
atgagtacaatatataaatagtaatgaacaaaacaaatgaaagaatgaatgaatttataatcactaatgaccaagtttaatttcaatgagaatcagcttg |
9149141 |
T |
|
| Q |
378 |
ataatgttgtgcaaggcttgaagaaccaaaacatgtccaaggcttttgtttctcttccatcagagattgtaatacttttgttgttttgtgctggtgagtc |
477 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9149140 |
ataatgttgtgcaaggcttgaagaaccaaaacatgtccaaggcttttgtttctcttccatcagagattgtaatacttttgttgttttgtgctggtgagtc |
9149041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University