View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1353_low_4 (Length: 475)

Name: NF1353_low_4
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1353_low_4
NF1353_low_4
[»] chr5 (2 HSPs)
chr5 (87-466)||(22295872-22296251)
chr5 (258-424)||(26880357-26880526)
[»] chr2 (2 HSPs)
chr2 (166-458)||(41939329-41939618)
chr2 (165-453)||(36259866-36260151)
[»] chr1 (2 HSPs)
chr1 (164-467)||(21035642-21035942)
chr1 (166-467)||(41939757-41940064)
[»] chr4 (1 HSPs)
chr4 (258-466)||(39300427-39300635)
[»] chr8 (2 HSPs)
chr8 (164-445)||(13516750-13517028)
chr8 (164-445)||(13606283-13606561)
[»] chr7 (1 HSPs)
chr7 (166-467)||(36569840-36570138)


Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 87 - 466
Target Start/End: Complemental strand, 22296251 - 22295872
Alignment:
Q  87 ccaagcacaaaattttgtcattttcttttgcacttaactataaagaactatttgaatgtaatgcatttttgtatatatcagatgcatatgtggggacatg 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  22296251 ccaagcacaaaattttgtcattttcttttgcacttaactataaagaactatttgaatgtaatgcatttatgtatatatcagatgcatatgtggggacatg 22296152  T
Q  187 gatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctattgttgtgcagagggatgcaagaa 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  22296151 gatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctattgctgtgcagagggatgcaagaa 22296052  T
Q  287 caacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaag 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22296051 caacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagcaaagccatttgggtgtagaaag 22295952  T
Q  387 tgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtgg 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22295951 tgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtgg 22295872  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 424
Target Start/End: Original strand, 26880357 - 26880526
Alignment:
Q  258 tgctattgttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacact----tcaaacacactacaagagg 353  Q
    |||||||||||  || ||||||| | ||||||||| |||||||||||  | | |||| | |||||||||||||||||     || |||||||||||||||    
T  26880357 tgctattgttgctcaaagggatgta-gaacaacattgagcatccaagagctaagccattgaaggatttcagaacactgcagacacacacactacaagagg 26880455  T
Q  354 aagcatggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaac 424  Q
    ||||||||  | ||| | |||   ||| |||| |||||||| ||||| ||||| | |||||| ||||||||    
T  26880456 aagcatggttcgaagacgtttacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaac 26880526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 166 - 458
Target Start/End: Original strand, 41939329 - 41939618
Alignment:
Q  166 agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctattg 265  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||  | ||||| |   | | ||| ||||||| || || |||||    
T  41939329 agatgcatatgtggggacatggatcacaatatagaaagggaccagaatctctaagaggaacacaaccaac---agccatgctaagactcccatgttattg 41939425  T
Q  266 ttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagca 365  Q
    |||||||   ||||||||||||||||| || ||||||||  |||  ||||| || ||||| ||||||||||||||||| |||||||| |||||||||  |    
T  41939426 ttgtgcacctggatgcaagaacaacattgatcatccaagagcaaaaccactgaaagattttagaacacttcaaacacattacaagagaaagcatggaata 41939525  T
Q  366 aagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgt 458  Q
    |||||||||  ||||||||||||| | ||| |||||||||| ||||||||||||||||| || |||||||||||||| || ||||||| ||||    
T  41939526 aagccatttatgtgtagaaagtgttgcaaagcatttgcagtaagaggtgactggagaactcacgagaaaaactgtgggaaactttggtattgt 41939618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 165 - 453
Target Start/End: Complemental strand, 36260151 - 36259866
Alignment:
Q  165 cagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctatt 264  Q
    ||||||||||||||||| ||||||||| |||  || ||||||||||| || || | ||||  | |||||||   | ||||| ||||||| || || ||||    
T  36260151 cagatgcatatgtgggggcatggatcagaatttaggaaaggaccagactcacttaaaggaacacaaccagc---agcaatgctaagactaccatgttatt 36260055  T
Q  265 gttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagc 364  Q
    |||||||  | || ||||||||||||||  | ||||||||  |||  ||| | |||||||||||||| || ||||| || ||||| || ||||||||| |    
T  36260054 gttgtgctcacggttgcaagaacaacatcaatcatccaagagcaaaaccattgaaggatttcagaactctccaaactcattacaaaagaaagcatggaac 36259955  T
Q  365 aaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggt 453  Q
    ||||||||||   || ||||| |||   ||| ||||||| |||| |||||| |||||||| ||||| ||||||||||||||| ||||||    
T  36259954 aaagccatttatctgcagaaaatgttctaaagcatttgctgttaaaggtgattggagaactcatgaaaaaaactgtggaaagttttggt 36259866  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 164 - 467
Target Start/End: Complemental strand, 21035942 - 21035642
Alignment:
Q  164 tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctat 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   | |||||    ||   ||| |||| ||||||||||||    
T  21035942 tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggtacacaacca---acaggtatgctaaggcttccttgctat 21035846  T
Q  264 tgttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggag 363  Q
    |||||| ||   || |||| ||||||||| || || |||||  ||| |||| | || ||||||||||||||||||||||| || || ||||| |||||      
T  21035845 tgttgttcaccaggttgcaggaacaacattgatcacccaagagcaaagccattgaaagatttcagaacacttcaaacacattataaaaggaaacatggga 21035746  T
Q  364 caaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctg 463  Q
      ||||| |||  ||||||||| ||||| ||  | ||||| |||||||| || |||||||| |||||||| || |||||||||||||||| |||| | ||    
T  21035745 ttaagccttttatgtgtagaaaatgtggtaaggcttttgctgttagaggagattggagaactcatgagaagaattgtggaaagctttggtattgtctttg 21035646  T
Q  464 tggt 467  Q
    ||||    
T  21035645 tggt 21035642  T

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Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 166 - 467
Target Start/End: Original strand, 41939757 - 41940064
Alignment:
Q  166 agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagc------ttcatcaatgttaagacttccttg 259  Q
    ||||||||||||||||||||||||| ||||| || |||||||| || ||||||| |||   |||||||||      |||||||||| | | ||| || ||    
T  41939757 agatgcatatgtggggacatggatctcaatataggaaaggaccggagtctctaaaagggccaaaaccagcatcatcttcatcaatgctgaaactaccatg 41939856  T
Q  260 ctattgttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcat 359  Q
     || |||||||| ||||| ||||  ||||| ||| |  |||||||| |||| ||||| || ||||||||||| |||||||||||||||||||| |||||     
T  41939857 ttactgttgtgctgagggttgcagaaacaatataaactatccaagggcaagaccactgaaagatttcagaacccttcaaacacactacaagagaaagcac 41939956  T
Q  360 ggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgta 459  Q
    ||||  ||  |||| | ||| ||||||||| ||||  ||||||| || ||||| || ||||| || |||||||| || ||||| ||||||||||||||||    
T  41939957 ggagggaaatcattcgagtgcagaaagtgtaggaagacatttgctgtgagaggagattggaggactcatgagaagaattgtgggaagctttggttttgta 41940056  T
Q  460 tctgtggt 467  Q
    ||||||||    
T  41940057 tctgtggt 41940064  T

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Target: chr4 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 258 - 466
Target Start/End: Original strand, 39300427 - 39300635
Alignment:
Q  258 tgctattgttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagc 357  Q
    |||||||||||| || ||||||| ||||||||||| |||||||||||  | | |||| | ||||||||||||||||| || |||||||||||||||||||    
T  39300427 tgctattgttgttcaaagggatgtaagaacaacattgagcatccaagagctaagccattgaaggatttcagaacactgcagacacactacaagaggaagc 39300526  T
Q  358 atggagcaaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttg 457  Q
    ||||  ||||  ||||    ||| |||| |||||||| ||||| ||||| | |||||| |||||||| ||||||||||||||||| |||| |||| ||||    
T  39300527 atggttcaaaaacattcacttgtcgaaaatgtgggaagccattggcagtgaaaggtgattggagaactcatgagaaaaactgtggcaagcgttggctttg 39300626  T
Q  458 tatctgtgg 466  Q
    |||||||||    
T  39300627 tatctgtgg 39300635  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 164 - 445
Target Start/End: Complemental strand, 13517028 - 13516750
Alignment:
Q  164 tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctat 263  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||  | |||||    || ||||| |||| || || ||||||    
T  13517028 tcagatgcatatgtggggacatggatctcaatacagaaaggggccagattctctaaaaggatcacaacca---acagcaatgctaaggctaccatgctat 13516932  T
Q  264 tgttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggag 363  Q
    |||||||||   || |||||| ||||||| || ||||| ||  ||| ||| ||||| ||||| ||||| ||||||||||| || ||||| ||||||||      
T  13516931 tgttgtgcaccaggttgcaagcacaacattgaccatcctagagcaaagcctctcaaagattttagaactcttcaaacacattataagagaaagcatggta 13516832  T
Q  364 caaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaa 445  Q
     ||| || | |  ||||||||| ||||| ||| |||||||||| | |||||| ||||||||||||||||| || ||||||||    
T  13516831 taaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaattgtggaaa 13516750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 164 - 445
Target Start/End: Complemental strand, 13606561 - 13606283
Alignment:
Q  164 tcagatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctat 263  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||| ||||||| ||||  | |||||    || ||||| |||| || || ||||||    
T  13606561 tcagatgcatatgtggggacatggatctcaatacagaaaggggccagattctctaaaaggatcacaacca---acagcaatgctaaggctaccatgctat 13606465  T
Q  264 tgttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggag 363  Q
    |||||||||   || |||||| ||||||| || ||||| ||  ||| ||| ||||| ||||| ||||| ||||||||||| || ||||| ||||||||      
T  13606464 tgttgtgcaccaggttgcaagcacaacattgaccatcctagagcaaagcctctcaaagattttagaactcttcaaacacattataagagaaagcatggta 13606365  T
Q  364 caaagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaa 445  Q
     ||| || | |  ||||||||| ||||| ||| |||||||||| | |||||| ||||||||||||||||| || ||||||||    
T  13606364 taaaaccttatatgtgtagaaaatgtggcaaatcatttgcagtgaaaggtgattggagaacacatgagaagaattgtggaaa 13606283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 166 - 467
Target Start/End: Original strand, 36569840 - 36570138
Alignment:
Q  166 agatgcatatgtggggacatggatcacaatacagaaaaggaccagaatctctaagaggagtaaaaccagcttcatcaatgttaagacttccttgctattg 265  Q
    |||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||   | |||||    ||  |||| |||| || ||||| || ||    
T  36569840 agatgcatatgtgggggcatggatcacagtacagaaaaggtcctgaatctctaagaggtacacaacca---acaggaatgctaaggctaccttgttactg 36569936  T
Q  266 ttgtgcagagggatgcaagaacaacatagagcatccaaggtcaaggccactcaaggatttcagaacacttcaaacacactacaagaggaagcatggagca 365  Q
    |||||||   || ||||  |||||||| || ||||||||  ||| ||| ||||| ||||| ||||||||||||||||| |||||||| || ||||||       
T  36569937 ttgtgcaccagggtgcagaaacaacattgatcatccaagagcaaagcctctcaaagattttagaacacttcaaacacattacaagagaaaacatggaatt 36570036  T
Q  366 aagccatttgggtgtagaaagtgtgggaaaccatttgcagttagaggtgactggagaacacatgagaaaaactgtggaaagctttggttttgtatctgtg 465  Q
    ||||||||   ||||||||| ||  | ||  | ||||| |||||||| || |||||||| ||||| || || |||||||||||||||| |||||||||||    
T  36570037 aagccattcatgtgtagaaaatgcagcaaggcttttgctgttagaggagattggagaactcatgaaaagaattgtggaaagctttggtattgtatctgtg 36570136  T

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