View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1353_low_6 (Length: 441)

Name: NF1353_low_6
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1353_low_6
NF1353_low_6
[»] chr8 (5 HSPs)
chr8 (187-369)||(14222761-14222941)
chr8 (15-125)||(14223004-14223114)
chr8 (395-441)||(14222713-14222759)
chr8 (71-111)||(11815810-11815850)
chr8 (275-307)||(14226736-14226768)
[»] chr3 (3 HSPs)
chr3 (43-125)||(16151808-16151890)
chr3 (82-125)||(16152731-16152774)
chr3 (189-234)||(16151954-16151997)
[»] chr2 (2 HSPs)
chr2 (76-112)||(18638544-18638580)
chr2 (71-117)||(42205873-42205919)
[»] chr5 (2 HSPs)
chr5 (68-117)||(9878067-9878116)
chr5 (68-117)||(9897917-9897966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (71-117)||(18146-18192)
[»] chr6 (1 HSPs)
chr6 (80-118)||(10341030-10341068)


Alignment Details
Target: chr8 (Bit Score: 164; Significance: 2e-87; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 187 - 369
Target Start/End: Complemental strand, 14222941 - 14222761
Alignment:
Q  187 cgaagctttcagtatagtaaggtgtgaaatcccatattccgaaaacatcttattgatcaaccaaacaacagataaaagtaaatgcgataatgaagatgaa 286  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14222941 cgaagctttcagta--gtaaggtgtgaaatcccatattccgaaaacatcttattgatcaaccaaacaacagataaaagtaaaagcgataatgaagatgaa 14222844  T
Q  287 gagaaagagaaaaatacctggtgcgaatggaagaacatttgggagaaaatgaagaaagggttttggtgggttttttagtttca 369  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14222843 gagaaagagaaaaatacctggagcgaatggaagaacatttgggagaaaatgaagaaagggttttggtgggttttttagtttca 14222761  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 14223114 - 14223004
Alignment:
Q  15 gacacttctgatcaaatacgttttcggcgtccgacatgacacatacacgacaaatattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccgg 114  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  14223114 gacacttctgatcaaatacgttttcggcgtctgacatgacacatacacgacacatattctcaaaatattattggtgtcgacatatcagtgtcgtgtcagg 14223015  T
Q  115 tgttgcatttc 125  Q
    |||||||||||    
T  14223014 tgttgcatttc 14223004  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 395 - 441
Target Start/End: Complemental strand, 14222759 - 14222713
Alignment:
Q  395 gtttgcgcggcaactgtaccctacctttggagaattcataaccgtct 441  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  14222759 gtttgcgcggcaactgtaccctacctttggagaattcataaccgtct 14222713  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 11815850 - 11815810
Alignment:
Q  71 ttctcaaaatattattggtgtcgacatgtcagtgtcgtgtc 111  Q
    |||||||| ||||||||||||| || |||||||||||||||    
T  11815850 ttctcaaattattattggtgtcaacgtgtcagtgtcgtgtc 11815810  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 275 - 307
Target Start/End: Complemental strand, 14226768 - 14226736
Alignment:
Q  275 aatgaagatgaagagaaagagaaaaatacctgg 307  Q
    |||||||||||| ||||||||||||||||||||    
T  14226768 aatgaagatgaaaagaaagagaaaaatacctgg 14226736  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 16151808 - 16151890
Alignment:
Q  43 gtccgacatgacacatacacgacaaatattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgttgcatttc 125  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16151808 gtccgacatgacacatacacgacacatattctcaaaatattattggtgtcgacatatcagtgtcgtgtccggtgttgcatttc 16151890  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 16152731 - 16152774
Alignment:
Q  82 ttattggtgtcgacatgtcagtgtcgtgtccggtgttgcatttc 125  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  16152731 ttattggtgtcgacatgtcagtgtcgtgtccgatgttgcatttc 16152774  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 16151954 - 16151997
Alignment:
Q  189 aagctttcagtatagtaaggtgtgaaatcccatattccgaaaacat 234  Q
    ||||||||||||  |||||||||||||||||||||||| |||||||    
T  16151954 aagctttcagta--gtaaggtgtgaaatcccatattccaaaaacat 16151997  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 18638580 - 18638544
Alignment:
Q  76 aaaatattattggtgtcgacatgtcagtgtcgtgtcc 112  Q
    |||||||||||||||||||||||||||||||||||||    
T  18638580 aaaatattattggtgtcgacatgtcagtgtcgtgtcc 18638544  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 42205873 - 42205919
Alignment:
Q  71 ttctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 117  Q
    |||||||| |||||||||||| | ||||||| |||||||||||||||    
T  42205873 ttctcaaattattattggtgttggcatgtcaatgtcgtgtccggtgt 42205919  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 9878067 - 9878116
Alignment:
Q  68 atattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 117  Q
    ||||||||||| |||||||||||||||| |||||||||| ||| ||||||    
T  9878067 atattctcaaattattattggtgtcgacgtgtcagtgtcttgttcggtgt 9878116  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 9897917 - 9897966
Alignment:
Q  68 atattctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 117  Q
    ||||||||||| |||||||||||||||  ||| |||| ||||||||||||    
T  9897917 atattctcaaattattattggtgtcgatgtgtgagtgccgtgtccggtgt 9897966  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 71 - 117
Target Start/End: Original strand, 18146 - 18192
Alignment:
Q  71 ttctcaaaatattattggtgtcgacatgtcagtgtcgtgtccggtgt 117  Q
    |||||||||| |||| ||||||||| ||||||||||||||| |||||    
T  18146 ttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtctggtgt 18192  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 10341068 - 10341030
Alignment:
Q  80 tattattggtgtcgacatgtcagtgtcgtgtccggtgtt 118  Q
    ||||| ||||||||||||||||||||| |||||||||||    
T  10341068 tattactggtgtcgacatgtcagtgtcatgtccggtgtt 10341030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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