View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1353_low_9 (Length: 353)
Name: NF1353_low_9
Description: NF1353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1353_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 23 - 285
Target Start/End: Complemental strand, 50956942 - 50956678
Alignment:
| Q |
23 |
atcatcaccaaaatatgttaacattcatcacttcaaggaaccaagttaggaaattgattccagctcaatataaattttaacatagcaaacagaatctcaa |
122 |
Q |
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| T |
50956942 |
atcatcaccaaaatatgttaacattaatcacttcaacgaaccaagttaggaaattgattccagctcaatataaattttaacatagcaaaccgaatctcaa |
50956843 |
T |
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| Q |
123 |
attttgactccaaaatacttaaactaacaccatgattacatgt--nnnnnnnnnnnnnnnnntaactaaccaagactagggcaaacaaagtgtggcgatc |
220 |
Q |
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| T |
50956842 |
attttgactccaaaatacttaaactaacaccatgattacatgtaaaaaaaaaaaagcaaaaataactaaccaagactagggcaaacaaagtgtggcgatc |
50956743 |
T |
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| Q |
221 |
aacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcatgct |
285 |
Q |
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| T |
50956742 |
aactttgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcatgct |
50956678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 184 - 283
Target Start/End: Complemental strand, 50947267 - 50947168
Alignment:
| Q |
184 |
aactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcatg |
283 |
Q |
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| T |
50947267 |
aactaaccaagactagcgcaaacagtgtgtggcgatcaacttcgatgaactcaaggtcccaactacggagacttttttcattatctccggcatatgcatg |
50947168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 50947409 - 50947317
Alignment:
| Q |
65 |
aagttaggaaattgattccagctcaatataaattttaacatagcaaacagaatctcaaattttgactccaaaatacttaaactaacaccatgat |
158 |
Q |
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| T |
50947409 |
aagttaggaaattgattatatctcaacataaatttca-catagcaaacagaatctcaaattttaactccaaattaattaaactaacatcatgat |
50947317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 50963726 - 50963653
Alignment:
| Q |
184 |
aactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagactt |
257 |
Q |
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| T |
50963726 |
aactaaccaagactagggcaaacaatgtgtggcgatcaactttgatgaactcaaggtcccaggaacggagactt |
50963653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 183 - 285
Target Start/End: Complemental strand, 15855127 - 15855025
Alignment:
| Q |
183 |
taactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcat |
282 |
Q |
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|||||||||||||||| |||||||| || || ||||||||| |||||| || | |||||| |||||||||||||||||||||||| ||||||| ||| |
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| T |
15855127 |
taactaaccaagactatagcaaacaatgtacggtgatcaactttgatgaactcttgatcccaaatacggagacttttttcattatctctagcatcttcat |
15855028 |
T |
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| Q |
283 |
gct |
285 |
Q |
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||| |
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| T |
15855027 |
gct |
15855025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Complemental strand, 15855310 - 15855230
Alignment:
| Q |
66 |
agttaggaaattgattccagctcaatataaattttaacatagcaaacagaatctcaaattttgactccaaaatacttaaacta |
148 |
Q |
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| T |
15855310 |
agttagtatattgattctatctcagtataaatttca-cattgcaaacagaatct-aaattttaactccaaaatacttaaacta |
15855230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 33630547 - 33630447
Alignment:
| Q |
183 |
taactaaccaagactagggcaaacaaagtgtggcgatcaacttcgatgaattcaaggtcccaattacggagacttttttcattatctccagcatctgcat |
282 |
Q |
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||||| || ||||||||||||||||| | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33630547 |
taacttactaagactagggcaaacaatgcgtggcgatcaacttctatgaactcaaggtcccaattacggagacttttttcattatctccagcttctgcat |
33630448 |
T |
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| Q |
283 |
g |
283 |
Q |
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| T |
33630447 |
g |
33630447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 33630652 - 33630603
Alignment:
| Q |
102 |
acatagcaaacagaatctcaaattttgactccaaaatacttaaactaaca |
151 |
Q |
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|||||||||||||||||||||||||| ||||||||||| | ||||||||| |
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| T |
33630652 |
acatagcaaacagaatctcaaattttaactccaaaataatcaaactaaca |
33630603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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