View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13540_high_10 (Length: 243)
Name: NF13540_high_10
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13540_high_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 6939781 - 6939570
Alignment:
| Q |
13 |
aatatggtttcaatttcaaatctctcgctgaattcaagactgatgaaaaaagaacaaattgaccacctgccttagttctcaaagtgataagaattggagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939781 |
aatatggtttcaatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattgaacacctgccttagttctcaaagtgataagaattggagg |
6939682 |
T |
|
| Q |
113 |
aaagatgagtagatgatgataaagaaaaatattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgt |
212 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6939681 |
aaatatgagtagatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaatggagcataaggaacaatggtatcatagtttgttgcgt |
6939582 |
T |
|
| Q |
213 |
gatggcgactgg |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6939581 |
gatggcgactgg |
6939570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 6942956 - 6942745
Alignment:
| Q |
13 |
aatatggtttcaatttcaaatctctcgctgaattcaagactgatgaaaaaagaacaaattgaccacctgccttagttctcaaagtgataagaattggagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6942956 |
aatatggtttcaatttcaaatctctcgctgaattgaagactgatgaaaaaagaacaaattttacacctgccttagttctcaaagtgataagaattggagg |
6942857 |
T |
|
| Q |
113 |
aaagatgagtagatgatgataaagaaaaatattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
6942856 |
aaagatgagtagatgatgataaagaaaaaaattcaaagttcaaagagggtaaagactgggaaatgagcataaggaacaatggtatcatagtttgttgcat |
6942757 |
T |
|
| Q |
213 |
gatggcgactgg |
224 |
Q |
| |
|
|||||||||||| |
|
|
| T |
6942756 |
gatggcgactgg |
6942745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 116
Target Start/End: Original strand, 6787746 - 6787849
Alignment:
| Q |
13 |
aatatggtttcaatttcaaatctctcgctgaattcaagactgatgaaaaaagaacaaattgaccacctgccttagttctcaaagtgataagaattggagg |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||||| ||| ||||| |||| |||| |||||||||||| ||| |
|
|
| T |
6787746 |
aatatggtttcaattgcaaatctctcgctgaattgaagactgattaagcgagaacaaattgaacacttgcctatgttcccaaactgataagaattgaagg |
6787845 |
T |
|
| Q |
113 |
aaag |
116 |
Q |
| |
|
|||| |
|
|
| T |
6787846 |
aaag |
6787849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University