View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13540_high_5 (Length: 412)

Name: NF13540_high_5
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13540_high_5
NF13540_high_5
[»] chr7 (13 HSPs)
chr7 (5-412)||(4712428-4712835)
chr7 (128-412)||(4846506-4846790)
chr7 (154-412)||(4784346-4784604)
chr7 (189-412)||(4816810-4817033)
chr7 (131-412)||(4697678-4697959)
chr7 (202-412)||(4863236-4863446)
chr7 (254-411)||(4652868-4653025)
chr7 (251-411)||(4643052-4643212)
chr7 (137-411)||(4636205-4636479)
chr7 (245-411)||(4661152-4661318)
chr7 (245-412)||(4666282-4666449)
chr7 (254-411)||(4630257-4630414)
chr7 (8-102)||(4846371-4846465)


Alignment Details
Target: chr7 (Bit Score: 408; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 5 - 412
Target Start/End: Original strand, 4712428 - 4712835
Alignment:
Q  5 cacattataccatcatctccaaatcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcattta 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712428 cacattataccatcatctccaaatcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcattta 4712527  T
Q  105 taatgggagtaatagtttttcttagaagaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaatttt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712528 taatgggagtaatagtttttcttagaagaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaatttt 4712627  T
Q  205 accatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaac 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712628 accatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaac 4712727  T
Q  305 gtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4712728 gtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagt 4712827  T
Q  405 tgctctct 412  Q
    ||||||||    
T  4712828 tgctctct 4712835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 128 - 412
Target Start/End: Original strand, 4846506 - 4846790
Alignment:
Q  128 agaagaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgtt 227  Q
    ||||||||||||||||||||| |  || ||||| ||||||||   ||||||| ||| || |||||||| |||| |||||| ||||||||||| || | ||    
T  4846506 agaagaagaagatttgaatctaatcttcaaatggaagaaagttcatggaagacaaacaaagaaggttcctcaactttaccgtcccatttgtgccgctatt 4846605  T
Q  228 ttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatgg 327  Q
    |||| |||| ||| |||||||  |||||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||  ||||    
T  4846606 ttacaatagcggagataagagaagctacaaacaacttcgaagatatttttatcattggagctggagggttcggcaacgtgtacaaaggttacatcaatgg 4846705  T
Q  328 actcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctct 412  Q
    ||||| |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  4846706 actcacacctgttgcgataaaacgtcgtaaaccgggttctcgataaggtctaaatgaattcatgaatgaaatcgagatgctctct 4846790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 154 - 412
Target Start/End: Original strand, 4784346 - 4784604
Alignment:
Q  154 tgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgct 253  Q
    ||||||| ||||||||   ||||||| ||| ||  ||||||| |||| |||||||||||||||||| || | |||||| |||| |||||||| ||| |||    
T  4784346 tgaaatggaagaaagttcatggaagacaaagaaacaaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagct 4784445  T
Q  254 acaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtc 353  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| | | ||| ||||||||||||||||    
T  4784446 acaaacaacttcgaagatatttttatcatcggggttggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtc 4784545  T
Q  354 gtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctct 412  Q
     ||||   ||||||| ||||||| | || || ||| ||||||| || ||||||||||||    
T  4784546 ttaaaccaggttctcaacaaggtgtgaacgagttcttgaatgagattgagttgctctct 4784604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 189 - 412
Target Start/End: Original strand, 4816810 - 4817033
Alignment:
Q  189 aaggttcatcaattttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggt 288  Q
    ||||||| |||| |||||||||||||||||| || | |||||| |||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  4816810 aaggttcctcaagtttaccatcccatttgtgccgctattttacaatagcggaaataaaagcagctacaaacaacttcgaagatatttttatcatcggggt 4816909  T
Q  289 tggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattc 388  Q
    |||||| |||||||| |||||||||||||| ||||||||| | | ||| |||||||||||||||| ||||   ||||||| ||||||| | || || |||    
T  4816910 tggagggttcggcaatgtgtacaaaggttatattgatggagttacaccagttgcgataaaacgtcttaaacctggttctcaacaaggtgttaacgagttc 4817009  T
Q  389 atgaatgaaatcgagttgctctct 412  Q
     ||||||| || ||||||||||||    
T  4817010 ttgaatgagattgagttgctctct 4817033  T

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Target: chr7; HSP #5
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 131 - 412
Target Start/End: Original strand, 4697678 - 4697959
Alignment:
Q  131 agaagaagatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgtttta 230  Q
    ||||||||| ||||||||||  |||||||| ||||||||   |||| || ||  || |||||||| |||| |||||||||||||||||| || | |||||    
T  4697678 agaagaagacttgaatctcatattgaaatggaagaaagttcatggaggacaagaaaagaaggttcgtcaactttaccatcccatttgtgccgctatttta 4697777  T
Q  231 ctatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggact 330  Q
    | |||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||||||| || || ||||||| |||||||||||| |||| |      
T  4697778 caatagcggagataagagccgctacaaacaacttcgaagatatttttatcattggagttggagggtttggtaacgtgttcaaaggttacatcgatgaagg 4697877  T
Q  331 catacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctct 412  Q
     | |||||| || |||||||||   |||  |||||||| ||||||| |||| || |||||||||||||||||||||||||||    
T  4697878 tacacctgtagcaataaaacgtttgaaaccgggttctcaacaaggtgtaaacgagttcatgaatgaaatcgagttgctctct 4697959  T

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Target: chr7; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 202 - 412
Target Start/End: Complemental strand, 4863446 - 4863236
Alignment:
Q  202 tttaccatcccatttgtgtcgatgttttactatagtggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggc 301  Q
    |||||||||||||||||| || | |||||| |||   || |||||||| |||||||||||||| || |||||||| ||||| || |||||||| ||||||    
T  4863446 tttaccatcccatttgtgccgctattttacaataacagagataagagctgctacaaacaactttgacgatattttcatcattggagttggagggttcggc 4863347  T
Q  302 aacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcg 401  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||||||||| ||||   ||||||| ||||||| ||||||| ||||||||||| ||||    
T  4863346 aacgtgtacaaaggttatattgatggagacatacctgttgcgataaaacgtcttaaaccaggttctcaacaaggtataaatgagttcatgaatgagatcg 4863247  T
Q  402 agttgctctct 412  Q
    | || ||||||    
T  4863246 aattactctct 4863236  T

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Target: chr7; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 411
Target Start/End: Complemental strand, 4653025 - 4652868
Alignment:
Q  254 acaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtc 353  Q
    ||||| |||||||| ||| |||| |||||||| ||||||||||| ||||||||||||||||||| ||| ||||||  ||| ||||||||||||||||| |    
T  4653025 acaaataacttcgatgatgttttcatcatcggtgttggaggatttggcaacgtgtacaaaggttgcatcgatggatccatgcctgttgcgataaaacgcc 4652926  T
Q  354 gtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctc 411  Q
      ||||  || |||| |||||||   || || ||||||||||| |||||||| |||||    
T  4652925 tcaaatctggctctcaacaaggtgccaacgagttcatgaatgagatcgagttactctc 4652868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 411
Target Start/End: Complemental strand, 4643212 - 4643052
Alignment:
Q  251 gctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaac 350  Q
    ||||||||||||||||| |||  |||||||||||| |||||||| || |||||||||||||||||||   ||||||||  || || ||||||| | || |    
T  4643212 gctacaaacaacttcgatgatgcttttatcatcggagttggagggtttggcaacgtgtacaaaggttgtgttgatggatccacacttgttgcggttaagc 4643113  T
Q  351 gtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctc 411  Q
    | |  |||| ||| |||| |||||||   || || ||||||||||||||||||||||||||    
T  4643112 gcctcaaatcgggctctcaacaaggtgccaacgagttcatgaatgaaatcgagttgctctc 4643052  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 137 - 411
Target Start/End: Complemental strand, 4636479 - 4636205
Alignment:
Q  137 agatttgaatctcaatttgaaatgaaagaaagtcattggaagataaataatgaaggttcatcaattttaccatcccatttgtgtcgatgttttactatag 236  Q
    |||||||||||||   || |||||| |||||||   ||||| | ||| ||||||||||| |||| |||||||||| ||||||| || |  ||||| || |    
T  4636479 agatttgaatctcctattaaaatgatagaaagtttatggaaaacaaagaatgaaggttcgtcaactttaccatcctatttgtgccgctactttacaatcg 4636380  T
Q  237 tggaaataagagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacc 336  Q
      || || ||||| || ||||| |||||||| |||      || ||||| ||||| || || || || ||||||||||||| ||||||||||  || |||    
T  4636379 cagagatcagagcagccacaaaaaacttcgatgatgaaaacattatcggtgttggggggtttgggaatgtgtacaaaggtttcattgatggatccacacc 4636280  T
Q  337 tgttgcgataaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctc 411  Q
     |||||||||||||| |  |  | ||| |||| |||||||  |||||| |||||||| || ||||||||||||||    
T  4636279 cgttgcgataaaacgcctcaggtcgggctctcaacaaggtgcaaatgagttcatgaacgagatcgagttgctctc 4636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 245 - 411
Target Start/End: Complemental strand, 4661318 - 4661152
Alignment:
Q  245 agagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcga 344  Q
    ||||| || ||||| ||||| || |||  ||| ||||| || |||||||| || |||||||||||||||||||   ||||||||   | || ||||||||    
T  4661318 agagcagccacaaaaaactttgatgatgatttcatcattggagttggagggtttggcaacgtgtacaaaggttgtgttgatggatcaacacttgttgcga 4661219  T
Q  345 taaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctc 411  Q
    | ||||| |  |||| ||| |||| ||||||| | || || |||||||| |||||||||||||||||    
T  4661218 ttaaacgcctcaaatcgggctctcaacaaggtgtcaacgagttcatgaacgaaatcgagttgctctc 4661152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 412
Target Start/End: Complemental strand, 4666449 - 4666282
Alignment:
Q  245 agagccgctacaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcga 344  Q
    ||||| || ||||||||||| || |||  ||| |||||||| |||||||| || |||||||||||||||||||   | ||||||  || || |||||| |    
T  4666449 agagcagccacaaacaactttgacgatgatttcatcatcggagttggagggtttggcaacgtgtacaaaggttgtgtcgatggatccacacttgttgcca 4666350  T
Q  345 taaaacgtcgtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctct 412  Q
    ||||||| |  ||||  || |||| |||||||   || || |||||||| |||||||| |||||||||    
T  4666349 taaaacgcctcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgaattgctctct 4666282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 411
Target Start/End: Complemental strand, 4630414 - 4630257
Alignment:
Q  254 acaaacaacttcgaagatatttttatcatcggggttggaggattcggcaacgtgtacaaaggttacattgatggactcatacctgttgcgataaaacgtc 353  Q
    ||||||||||| ||  ||  ||| ||||||||  ||||||| || || ||||||||||||||||   | ||||||  || |||||||||||||||||| |    
T  4630414 acaaacaactttgacaatgatttcatcatcggatttggagggtttgggaacgtgtacaaaggttgtgtcgatggatccacacctgttgcgataaaacgcc 4630315  T
Q  354 gtaaattgggttctcgacaaggtctaaatgaattcatgaatgaaatcgagttgctctc 411  Q
      ||||  || |||| |||||||   || || |||||||| |||||||||||||||||    
T  4630314 tcaaatcaggctctcaacaaggtgccaacgagttcatgaacgaaatcgagttgctctc 4630257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 4846371 - 4846465
Alignment:
Q  8 attataccatcatctccaaatcgacgatcgaagtcgaagaaatcacccatagtcatgtttgctttggttggattatcatgtctcttgctagcatt 102  Q
    ||||||||| |||||||||| |  ||||| ||||| ||||| ||| |||   ||||| ||||| |||||||| | |||||||||||||| |||||    
T  4846371 attataccaacatctccaaaacaccgatcaaagtcaaagaagtcaaccacgttcatggttgctgtggttggagtttcatgtctcttgctggcatt 4846465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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