View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13540_low_1 (Length: 688)
Name: NF13540_low_1
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13540_low_1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 578; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 18 - 688
Target Start/End: Complemental strand, 8543159 - 8542496
Alignment:
| Q |
18 |
ctaatactatgtagtattaccatgagagatgagaagtgtttgctcctatatttgaacaataacatttgaaagtgtttttatcaatggtggtagagttcta |
117 |
Q |
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| T |
8543159 |
ctaatactatgtagtattaccatgagagatgagatgtgtttgctcctatatttgaacaataacatttgaaagtgtttttatcaatggtggtagagttcta |
8543060 |
T |
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| Q |
118 |
aacacttttagtagttgttgaaatccataaataattggttaatatatccagaaaagactgag-cattaattagcactcataatttgttaatatattcttt |
216 |
Q |
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| T |
8543059 |
aacacttttagtagttgttgaaatccataaataattggttaatatatccagaaaagactgaggcattaattagcactcataattggttaatatattcttt |
8542960 |
T |
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| Q |
217 |
ctttgaatttaaagacctgaatattcaagaggagtttgaaacatatnnnnnnnttgttacatttattaatcatatattgaaattaaattttatatatgtt |
316 |
Q |
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| T |
8542959 |
ctttgaatttaaaga--------ttcaagaggagtttgaaacatataaaaaaattgttacatttattaatcatatattgaaattaaattttatatatgtt |
8542868 |
T |
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| Q |
317 |
atcaatgtataaacatttttaacatttgtcacatttctaatctttcttttttgaaggaacatttctaatcttatatcaatttaatttcaacataagatta |
416 |
Q |
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| T |
8542867 |
atcaatgtataaacatttttaacatttgtcacatttctaatctttcttttttgaaggaacatttctaatcttatatcaatttaatttcaacataagatta |
8542768 |
T |
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| Q |
417 |
atacatgtaacaatttcaaatgttttaaactccttttaaatgtccaagtctttaaattcaaagaaagaaaacatcaaccaattttgagtactaattaaaa |
516 |
Q |
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| T |
8542767 |
atacatgtaacaatttcaaatgttttaaactccttttaaatgtccaagtctttaaattcaaagaaagaagacatcaaccaattttgagtactaattaaaa |
8542668 |
T |
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| Q |
517 |
tgcctgagcaatttctggatttaaacaacttctaagagtgtctaaaactctaacatcagtagagttttgaaacatgagtgacaaacacatccctagccat |
616 |
Q |
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| T |
8542667 |
tgcctgagcaatttctggatttaaacaacttctaagagtgtctaaaactctaacatcagtagagttttgaaacatgagtgacaaacacatccctagccat |
8542568 |
T |
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| Q |
617 |
tcttgatactatcagaaagctcgagcannnnnnnncttcttccaccagacaactagtttaaacttattgtct |
688 |
Q |
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| T |
8542567 |
tcttgatactatcagaaagctcgagcattttttttcttcttccaccagacaactagtttaaacttattgtct |
8542496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 305
Target Start/End: Original strand, 8542670 - 8542790
Alignment:
| Q |
182 |
ttaattagcactcataatttgttaatatattctttctttgaatttaaagacctgaatattcaagaggagtttgaaacatatnnnnnnnttgttacattta |
281 |
Q |
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| T |
8542670 |
ttaattagtactcaaaattggttgatgtcttctttctttgaatttaaagacttggacatttaaaaggagtttaaaacattt---gaaattgttacatgta |
8542766 |
T |
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| Q |
282 |
ttaatcatatattgaaattaaatt |
305 |
Q |
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| T |
8542767 |
ttaatcttatgttgaaattaaatt |
8542790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Original strand, 8542945 - 8542994
Alignment:
| Q |
465 |
tctttaaattcaaagaaagaaaacatcaaccaattttgagtactaattaa |
514 |
Q |
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| T |
8542945 |
tctttaaattcaaagaaagaatatattaaccaattatgagtgctaattaa |
8542994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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