View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13540_low_12 (Length: 236)

Name: NF13540_low_12
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13540_low_12
NF13540_low_12
[»] chr2 (5 HSPs)
chr2 (19-236)||(35695290-35695510)
chr2 (84-236)||(42006480-42006631)
chr2 (54-201)||(34922008-34922155)
chr2 (54-178)||(35021154-35021277)
chr2 (118-157)||(1642476-1642515)
[»] chr1 (11 HSPs)
chr1 (53-236)||(26767642-26767824)
chr1 (63-236)||(9388826-9388999)
chr1 (53-235)||(41666195-41666377)
chr1 (47-225)||(7191879-7192057)
chr1 (53-236)||(43416253-43416436)
chr1 (47-236)||(43670821-43671009)
chr1 (70-201)||(43344927-43345056)
chr1 (80-162)||(38275954-38276036)
chr1 (139-236)||(27323505-27323601)
chr1 (70-236)||(12857395-12857561)
chr1 (123-201)||(15061608-15061686)
[»] chr4 (16 HSPs)
chr4 (53-236)||(43365821-43366004)
chr4 (70-236)||(12499139-12499304)
chr4 (113-233)||(51871683-51871802)
chr4 (53-236)||(1351391-1351573)
chr4 (53-162)||(44363321-44363430)
chr4 (110-228)||(11996282-11996401)
chr4 (48-235)||(15562131-15562318)
chr4 (62-206)||(18879119-18879263)
chr4 (53-129)||(51871598-51871674)
chr4 (48-95)||(12499032-12499079)
chr4 (53-95)||(11996004-11996046)
chr4 (61-130)||(6216420-6216488)
chr4 (47-95)||(6216213-6216261)
chr4 (118-162)||(40838042-40838086)
chr4 (48-92)||(44362929-44362973)
chr4 (148-236)||(44363036-44363124)
[»] scaffold0633 (1 HSPs)
scaffold0633 (53-235)||(8852-9034)
[»] chr8 (5 HSPs)
chr8 (48-206)||(13267811-13267968)
chr8 (53-206)||(3207641-3207794)
chr8 (48-206)||(32089182-32089340)
chr8 (53-191)||(39186175-39186314)
chr8 (47-206)||(24587104-24587262)
[»] chr6 (12 HSPs)
chr6 (54-236)||(10244413-10244595)
chr6 (48-236)||(28587739-28587927)
chr6 (53-206)||(6196722-6196875)
chr6 (111-191)||(33446931-33447011)
chr6 (53-162)||(2236938-2237047)
chr6 (53-162)||(4838001-4838110)
chr6 (127-236)||(12480423-12480532)
chr6 (53-95)||(6198102-6198144)
chr6 (113-233)||(33819887-33820007)
chr6 (118-160)||(35187570-35187612)
chr6 (54-95)||(28587639-28587680)
chr6 (118-162)||(2145556-2145600)
[»] chr5 (12 HSPs)
chr5 (63-236)||(40324370-40324543)
chr5 (53-206)||(13639519-13639672)
chr5 (53-216)||(39741411-39741574)
chr5 (62-236)||(5548120-5548294)
chr5 (61-198)||(3577572-3577708)
chr5 (54-236)||(30223807-30223988)
chr5 (53-161)||(13361006-13361114)
chr5 (84-236)||(14626351-14626503)
chr5 (53-143)||(42552562-42552652)
chr5 (54-158)||(39917416-39917520)
chr5 (53-94)||(3577791-3577832)
chr5 (113-162)||(37510290-37510339)
[»] chr7 (20 HSPs)
chr7 (53-232)||(3565498-3565677)
chr7 (109-226)||(27567407-27567524)
chr7 (54-236)||(37327421-37327603)
chr7 (54-162)||(26472004-26472110)
chr7 (54-162)||(26548444-26548550)
chr7 (117-218)||(40717585-40717686)
chr7 (83-162)||(45871760-45871839)
chr7 (113-236)||(29366475-29366598)
chr7 (81-201)||(17298691-17298811)
chr7 (53-206)||(20896288-20896443)
chr7 (182-236)||(27569363-27569417)
chr7 (62-160)||(39751209-39751307)
chr7 (74-236)||(46303686-46303847)
chr7 (53-162)||(40744582-40744691)
chr7 (118-161)||(11752910-11752953)
chr7 (118-236)||(23415976-23416092)
chr7 (48-95)||(29366368-29366415)
chr7 (61-183)||(44857848-44857969)
chr7 (47-112)||(42055302-42055366)
chr7 (48-100)||(37327314-37327366)
[»] chr3 (8 HSPs)
chr3 (48-236)||(38216098-38216287)
chr3 (53-236)||(39492307-39492490)
chr3 (61-236)||(43071666-43071839)
chr3 (113-236)||(49726526-49726649)
chr3 (53-206)||(14742110-14742259)
chr3 (48-95)||(38216347-38216394)
chr3 (48-94)||(39450637-39450683)
chr3 (126-198)||(3979055-3979127)
[»] scaffold0157 (2 HSPs)
scaffold0157 (70-236)||(21173-21338)
scaffold0157 (48-95)||(21398-21445)
[»] scaffold0122 (1 HSPs)
scaffold0122 (53-206)||(17682-17835)
[»] scaffold0062 (2 HSPs)
scaffold0062 (61-206)||(20253-20393)
scaffold0062 (61-206)||(30421-30561)


Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 35695290 - 35695510
Alignment:
Q  19 gtgataacatgttataaaacatgctatatccccc---attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttat 115  Q
    ||||||||||||||||||||||| ||||||||||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||    
T  35695290 gtgataacatgttataaaacatgttatatccccccctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtccctttat 35695389  T
Q  116 ctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttc 215  Q
    |||||||||| ||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||    
T  35695390 ctaatattttatctaaaatatggtgatataacatgtttcaaatgaagtattcaaggaaattttcttacgatttcatcgatgttgatattttctcgccttc 35695489  T
Q  216 atattatataccacgacattt 236  Q
    |||||||||||||||||||||    
T  35695490 atattatataccacgacattt 35695510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 42006631 - 42006480
Alignment:
Q  84 attttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttac 183  Q
    ||||||||||| ||||  |||  ||| ||||| |||||||||||| ||||||||||||||| ||||||||||||| |||  ||||| | ||||||| |||    
T  42006631 attttaaaatttcacagttttggtccttttatataatattttgtcgaaaatatgatgatatgacatgttttaaattaagttttcaaaagaattttc-tac 42006533  T
Q  184 gatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    ||||| ||  | ||||||||||||||| ||| | || ||||||||| ||||||    
T  42006532 gattttatcaaagttgatattttctcatctttagataatataccacaacattt 42006480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 34922008 - 34922155
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    ||||||| |||||| ||| || ||| || ||||||||||||| ||   |||  ||||| ||| |||||| ||  ||||||||||||||||||||||||||    
T  34922008 ttttcactattttgcaaatttagtctccctattttaaaattcgacggttttggtccctctatataatatcttcactaaaatatgatgatataacatgttt 34922107  T
Q  154 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgat 201  Q
    |||||||||  || ||   |||||||||||||||| ||  ||||||||    
T  34922108 taaatgaagtttttaacgtaattttcttacgattttatcaatgttgat 34922155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 178
Target Start/End: Complemental strand, 35021277 - 35021154
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    |||||| ||||||| ||||||||||| | |||| |||| ||  |||| |||  ||| | |||| ||| |||||||||||||||  |||||| | ||||||    
T  35021277 ttttcatcattttgcaaaattggtcctcctattataaa-ttagacaattttggtccttctatcaaattttttgtctaaaatattgtgatatgatatgttt 35021179  T
Q  154 taaatgaagcattcaagaaaatttt 178  Q
    |||||||||  ||||||||||||||    
T  35021178 taaatgaagttttcaagaaaatttt 35021154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 1642515 - 1642476
Alignment:
Q  118 aatattttgtctaaaatatgatgatataacatgttttaaa 157  Q
    ||||||| |||||||||||||||||||||||| |||||||    
T  1642515 aatatttggtctaaaatatgatgatataacattttttaaa 1642476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 26767642 - 26767824
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||||||||||||||||||| |||||| |||||||||||  |||  |||  ||||| ||| | ||||||||||||||||||||||||||||||||||    
T  26767642 attttcaccattttgtaaaattgttcccct-attttaaaatttgacagttttggtccctctatattatattttgtctaaaatatgatgatataacatgtt 26767740  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
     |||||||||  || |||||| |||||||| ||||| || |||||||||||||||||| |||||||| |||||||| |||||||    
T  26767741 ctaaatgaagtttttaagaaagttttcttatgattttatcgatgttgatattttctcatcttcatatcatataccaagacattt 26767824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 9388826 - 9388999
Alignment:
Q  63 ttttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    ||||||||||||||||||| ||||||||||||| |||| |||| ||||| ||||| | ||||||| ||||||||| |||||||||||||||||||||  |    
T  9388826 ttttgtaaaattggtccccctattttaaaattcgacaattttagtccctctatctcaaattttgtttaaaatatggtgatataacatgttttaaatggtg 9388925  T
Q  163 cattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
      || |||||||| |||||| |||||||||| |||||||||||||||  ||||| || |||||||||| |||||    
T  9388926 tttttaagaaaatattcttatgatttcattgttgttgatattttctcgtcttcagatcatataccacggcattt 9388999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 235
Target Start/End: Complemental strand, 41666377 - 41666195
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||| |||||||| | ||| ||||||||||||| |||  |||  |||| |||  ||||||||| ||||||||||||||| ||||||||||    
T  41666377 attttcatcattttataaaattgattcccctattttaaaattcgacagttttggtcccattacataatattttatctaaaatatgatgacataacatgtt 41666278  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatt 235  Q
    ||||||||||  |||||||||||||||||||| ||||   || | |||||||||||||  ||||||| |||||||||||||||    
T  41666277 ttaaatgaagttttcaagaaaattttcttacgttttcgccgacgatgatattttctcattttcatatcatataccacgacatt 41666195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 7191879 - 7192057
Alignment:
Q  47 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 146  Q
    ||||| ||||| | |||||||  |||| ||||||| ||||||||||||| |||  |||  ||||||||||||| ||||||||||||||||| ||||||||    
T  7191879 tcccctattttaatcattttgccaaataggtccccatattttaaaattcgacagttttggtccctttatctaaaattttgtctaaaatatggtgatataa 7191978  T
Q  147 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatata 225  Q
    ||||||||||||| ||  |||||   |||| | |||||||||||| |||||||||||||| ||| ||||| || |||||    
T  7191979 catgttttaaatggagttttcaaaggaattattttacgatttcatcgatgttgatattttatcatcttcagatcatata 7192057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 43416253 - 43416436
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||||||||||| ||||||| ||| ||  ||||||||| | |||  |||  ||||| ||| ||||| ||||||||||||||| ||||||||||||||    
T  43416253 attttcaccattttgcaaaattgatcctctg-ttttaaaat-cgacagttttggtccctctatttaataatttgtctaaaatatggtgatataacatgtt 43416350  T
Q  153 ttaaatgaagcattcaagaaaattttcttacga--tttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||   || ||  ||||||||||| ||  |||||| |||||| ||||||| |||  |||| ||||||||| |||||||||    
T  43416351 ttaaatgaaatttttaaagaaattttcttaagatttttcatcgatgttaatattttatcatattcacattatatactacgacattt 43416436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 47 - 236
Target Start/End: Complemental strand, 43671009 - 43670821
Alignment:
Q  47 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 146  Q
    ||||| ||||||| |||||||  |||||| || | |||||||||||||| |||| ||| |||||| |||   ||||||||||||||||||  |||||  |    
T  43671009 tcccctattttcatcattttgcgaaattgttctc-ttattttaaaattcgacaattttgatccctctattacatattttgtctaaaatattgtgatacta 43670911  T
Q  147 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
     ||||||| |||||||  || |||  |||||| |||| ||||||| ||||||||||||||   | |||||||| |||| |||||||||||    
T  43670910 tatgtttttaatgaagtttttaagggaattttgttacaatttcatcgatgttgatatttttctatcttcatatcatattccacgacattt 43670821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 70 - 201
Target Start/End: Complemental strand, 43345056 - 43344927
Alignment:
Q  70 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 169  Q
    |||||| ||||||||||||||||||| |||| |||| ||||| |||  ||||||  |||||||||||  |||||| | |||||||||||||||  || ||    
T  43345056 aaattgatccccttattttaaaattcgacaattttagtccctatatgaaatatt--gtctaaaatattgtgatatgatatgttttaaatgaagtttttaa 43344959  T
Q  170 gaaaattttcttacgatttcattgatgttgat 201  Q
     |||| ||| |||| |||||||||||||||||    
T  43344958 aaaaaatttgttacaatttcattgatgttgat 43344927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 38276036 - 38275954
Alignment:
Q  80 ccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    |||||||||||||||| |||| |||  |||||||||| ||||| |||||||||||||  |||||| | |||||||||||||||    
T  38276036 ccttattttaaaattcaacaattttggtccctttatcaaatatgttgtctaaaatattgtgatatgatatgttttaaatgaag 38275954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 27323505 - 27323601
Alignment:
Q  139 tgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||| |||||||||||||||||  || ||| ||||||| |||||||||||| |||||||||||||| ||| ||| | ||  |||||||||||||||    
T  27323505 tgatatgacatgttttaaatgaagtttttaaggaaatttt-ttacgatttcatggatgttgatattttatcatctttagatcgtataccacgacattt 27323601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 12857561 - 12857395
Alignment:
Q  70 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 169  Q
    |||||||||| | ||||||||||||  |||| |||  || || |||| ||| ||||||||| |||||  |||||| | |||||||||||||||  |||||    
T  12857561 aaattggtcctcctattttaaaattggacaattttggtctctctatcaaattttttgtctagaatattgtgatatgatatgttttaaatgaagttttcaa 12857462  T
Q  170 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
       || ||| || | |||| |||||||||||| |||| ||| ||| | || |||| ||| |||||||    
T  12857461 aggaactttattgcaattttattgatgttgatcttttttcatctttagatcatattccatgacattt 12857395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 15061686 - 15061608
Alignment:
Q  123 tttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgat 201  Q
    |||||||| |||||  |||||| | |||||||||||||||  || ||| ||||||| |||| ||||||| |||||||||    
T  15061686 tttgtctagaatattgtgatatgatatgttttaaatgaagtttttaaggaaattttgttacaatttcatcgatgttgat 15061608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 43365821 - 43366004
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||| ||||||||| ||||||||||| | ||||||||||||| |||  |||  | ||| |||||||||||||||||||||||||||||| |||||||||    
T  43365821 atttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaaatatgatgatgtaacatgtt 43365920  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    ||||||||||  || |||  ||||||||||||||||||| |||||| |||||||||||  |||| || ||||||||| ||||||    
T  43365921 ttaaatgaagtttttaagggaattttcttacgatttcatcgatgtttatattttctcatattcagatcatataccacaacattt 43366004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 236
Target Start/End: Complemental strand, 12499304 - 12499139
Alignment:
Q  70 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 169  Q
    |||||||||||| ||||||||||||| |||| |||  ||||| |||| |||||||||||||||||||  || ||| | || ||||||||||||  |||||    
T  12499304 aaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatattgtggtatgatat-ttttaaatgaagttttcaa 12499206  T
Q  170 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |  |||||| |||| ||||||||||||||||| ||||  || |||||||| |||| |||||||||||    
T  12499205 gggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccacgacattt 12499139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 51871683 - 51871802
Alignment:
Q  113 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 212  Q
    ||||||||| ||| ||||||||||| ||||||||||||||||| ||||||  |  ||| || |||||||||||||||||  ||||||||||||| ||| |    
T  51871683 tatctaataatttatctaaaatatggtgatataacatgttttagatgaagattataaggaa-ttttcttacgatttcatcaatgttgatattttatcatc 51871781  T
Q  213 ttcatattatataccacgaca 233  Q
    ||||||| |||||||||||||    
T  51871782 ttcatatcatataccacgaca 51871802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 1351573 - 1351391
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    |||||||  ||||||| |||||||||| | ||||||||||||| |||| |||  ||||| |||| ||||||| |||||||||||  |||||| |  ||||    
T  1351573 attttcattattttgtgaaattggtcctcctattttaaaattcaacaattttggtccctctatcaaatattt-gtctaaaatattgtgatatgatttgtt 1351475  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||   |||||| ||||||| |||| ||||||| ||||||||| ||||  || ||||| || |||| |||||| ||||    
T  1351474 ttaaatgaatttttcaaggaaattttgttacaatttcatcgatgttgatctttttccatcttcagatcatattccacgatattt 1351391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 44363430 - 44363321
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||||  |||||||||||| ||||||||||||| |||| |||  ||||| |||  |||||||||||||||||||  |||||| | |||||    
T  44363430 attttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtctaaaatattgtgatatgatatgtt 44363331  T
Q  153 ttaaatgaag 162  Q
    ||||||||||    
T  44363330 ttaaatgaag 44363321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 110 - 228
Target Start/End: Complemental strand, 11996401 - 11996282
Alignment:
Q  110 ctttatctaatatttt-gtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttct 208  Q
    |||||||||||||||| || ||||||||| |||||||||||||||||||| ||   ||||||| |||||| ||||||||| || ||| || |||||||||    
T  11996401 ctttatctaatatttttgtttaaaatatggtgatataacatgttttaaataaaattttcaagagaatttttttacgattttatcgattttcatattttct 11996302  T
Q  209 caccttcatattatatacca 228  Q
    || ||||  || ||||||||    
T  11996301 catcttcgaatcatatacca 11996282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 48 - 235
Target Start/End: Original strand, 15562131 - 15562318
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 147  Q
    |||| ||||| | |||||| | |||||| ||||| ||||||||||||  |||  |||  ||||| ||||||||| |||||||||||||   |||||||||    
T  15562131 ccccgatttttatcattttatgaaattgatccccctattttaaaatttgacagttttggtccctctatctaataatttgtctaaaatacagtgatataac 15562230  T
Q  148 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatt 235  Q
    ||||||||| |||||  || ||   |||||||||||||||||||  ||||||| ||||| ||| ||| | || |||||  ||||||||    
T  15562231 atgttttaattgaagtttttaaatgaattttcttacgatttcatcaatgttgaaattttatcatcttgagatcatatagaacgacatt 15562318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 206
Target Start/End: Original strand, 18879119 - 18879263
Alignment:
Q  62 attttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaa 161  Q
    |||||| ||||| |||| || ||||||||||||| |||| |||  || || |||  ||||||||||||||||||   |||||| | ||||||||||||||    
T  18879119 attttgcaaaatcggtcgccctattttaaaattcaacaattttggtcactctataaaatattttgtctaaaatactgtgatatgatatgttttaaatgaa 18879218  T
Q  162 gcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    |   ||||| ||| ||| |||| ||||||| ||||||||| ||||    
T  18879219 gttatcaaggaaaatttgttacaatttcatcgatgttgatctttt 18879263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 51871598 - 51871674
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtct 129  Q
    |||||||||||||| | ||||||||| || ||||||||||||  ||| ||||| || || ||||||||| |||||||    
T  51871598 attttcaccattttatgaaattggtctccgtattttaaaatttgacagctttagtctctctatctaataatttgtct 51871674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 12499032 - 12499079
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  12499032 cccctattttcaccattttgcagaattggtccccctattttaaaattc 12499079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 11996004 - 11996046
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    ||||||| | |||||| ||||||||||||||||||||||||||    
T  11996004 attttcatctttttgtgaaattggtccccttattttaaaattc 11996046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 130
Target Start/End: Complemental strand, 6216488 - 6216420
Alignment:
Q  61 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtcta 130  Q
    ||||||| ||||||| |||||| |||||||||||  ||||||||  ||||| |||| |||||||||||||    
T  6216488 cattttgcaaaattgttcccct-attttaaaatttgacaactttggtccctctatcaaatattttgtcta 6216420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 6216213 - 6216261
Alignment:
Q  47 tcccccattttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    ||||| |||||||||| |||| | ||||||||||| |||||||||||||    
T  6216213 tcccctattttcaccactttgcagaattggtccccctattttaaaattc 6216261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 40838086 - 40838042
Alignment:
Q  118 aatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    ||||||| ||||||||||||||||||| ||| |||| ||||||||    
T  40838086 aatatttagtctaaaatatgatgatatgacaagtttaaaatgaag 40838042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 44362929 - 44362973
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaa 92  Q
    |||| ||||||||||||||||| ||||||||||| | ||||||||    
T  44362929 cccctattttcaccattttgtagaattggtccccctgttttaaaa 44362973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 236
Target Start/End: Complemental strand, 44363124 - 44363036
Alignment:
Q  148 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||||||||  ||||||  |||||| |||| ||||||| ||  ||||| |||  ||| |||||||| |||| |||||||||||    
T  44363124 atgttttaaatgaagttttcaagggaattttgttacaatttcatcgacattgatctttattcatcttcatatcatattccacgacattt 44363036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0633 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0633
Description:

Target: scaffold0633; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 235
Target Start/End: Original strand, 8852 - 9034
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||| |||||||| | ||| ||||||||||||| |||  |||  |||| |||  ||||||||| ||||||||||||||| ||||||||||    
T  8852 attttcatcattttataaaattgattcccctattttaaaattcgacagttttggtcccattacataatattttatctaaaatatgatgacataacatgtt 8951  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacatt 235  Q
    ||||||||||  |||||||||||||||||||| ||||   || | |||||||||||||  ||||||| |||||||||||||||    
T  8952 ttaaatgaagttttcaagaaaattttcttacgttttcgccgacgatgatattttctcattttcatatcatataccacgacatt 9034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 48 - 206
Target Start/End: Original strand, 13267811 - 13267968
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 147  Q
    |||| ||||| || ||||||||||||||||||||| |||||||||||| |||  |||  ||||| | ||||||||||||| ||||||||| |||||||||    
T  13267811 cccctatttttactattttgtaaaattggtcccct-attttaaaattcgacagttttggtccctctttctaatattttgtttaaaatatggtgatataac 13267909  T
Q  148 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    |||||||||||||||  |||||   |||||||||| |||||||||||||||||||||||    
T  13267910 atgttttaaatgaagttttcaaaggaattttcttatgatttcattgatgttgatatttt 13267968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 3207641 - 3207794
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| ||||||  |||||||||| |  ||||||||||||| |||| |||| ||||| |||| |||||||||||||||||||  |||||| | |||||    
T  3207641 attttcatcattttacaaaattggtctctctattttaaaattcgacaattttagtccctctatcaaatattttgtctaaaatattgtgatatgatatgtt 3207740  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    ||||||||||  |||||  ||||||| |||| ||||||| ||||||||||||||    
T  3207741 ttaaatgaagttttcaatgaaattttgttacaatttcatcgatgttgatatttt 3207794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 48 - 206
Target Start/End: Complemental strand, 32089340 - 32089182
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 147  Q
    |||| ||||||| | |||||| |||||||||||| |||||| || ||| |||  |||  || || ||||||||| ||||||| ||||||| |||||||||    
T  32089340 cccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtcttaaatatggtgatataac 32089241  T
Q  148 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    |||||||||||||||  || | ||||||||| ||||||||||||  |||||||||||||    
T  32089240 atgttttaaatgaagtttttatgaaaattttattacgatttcatcaatgttgatatttt 32089182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 53 - 191
Target Start/End: Original strand, 39186175 - 39186314
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaa-ttccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgt 151  Q
    ||||||| ||||||| ||||||||||||| |||||||||| ||| |||| ||| |||||| ||||  ||||||||||||||||||  |||||| | ||||    
T  39186175 attttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttgatccctctatcacatattttgtctaaaatattgtgatatcatatgt 39186274  T
Q  152 tttaaatgaagcattcaagaaaattttcttacgatttcat 191  Q
    |||||||||||  || ||  ||||||| |||| |||||||    
T  39186275 tttaaatgaagtttttaaagaaattttgttacaatttcat 39186314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 206
Target Start/End: Original strand, 24587104 - 24587262
Alignment:
Q  47 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 146  Q
    ||||| ||||| || ||||||||   |||||| || ||||||||||||| |||| |||  ||||| |||| ||||||||||||||||| | ||||||| |    
T  24587104 tcccctatttttactattttgtagttttggtctccatattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatgttatgatatga 24587203  T
Q  147 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
     ||||||||||| ||   |||||| ||| ||| |||| ||||||| ||||||||| ||||    
T  24587204 tatgttttaaat-aatgtttcaaggaaagtttgttacaatttcatcgatgttgatctttt 24587262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 10244595 - 10244413
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    ||||||| |||||| ||||||||||||| ||||||||||||  |||  |||  | ||| ||||   ||||||||||||||||||||||||||||||||||    
T  10244595 ttttcactattttgcaaaattggtccccctattttaaaatttgacagttttggttcctatatcatttattttgtctaaaatatgatgatataacatgttt 10244496  T
Q  154 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||  || ||| || ||||||||||||||||| ||||||||||||||||||  |||| || |||||| | |||||||    
T  10244495 taaatgaagtttttaaggaagttttcttacgatttcatcgatgttgatattttctcattttcagatcatatactaagacattt 10244413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 236
Target Start/End: Complemental strand, 28587927 - 28587739
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataac 147  Q
    |||| ||||||||||||||||||| |||| |||| ||||||||||||| |||  |||  ||||| | | |||||| ||| ||||||||||||||||||||    
T  28587927 cccctattttcaccattttgtaaatttggcccccctattttaaaattcgacagttttggtccctctttataatatcttgactaaaatatgatgatataac 28587828  T
Q  148 atgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||||||||  || ||   ||||||||| | |||| || ||| || | ||||||||| |||||||| |||| ||| |||||||    
T  28587827 atgttttaaatgaagtttttaacgtaattttctttcaattttatcgatttttacattttctcatcttcatatcatattccaagacattt 28587739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 6196722 - 6196875
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| ||||||   |||||||||||| ||||||||||||| |||| |||  ||||| |||| |||||||||||||||||||  ||||||   || ||    
T  6196722 attttcatcattttacgaaattggtccccctattttaaaattcaacaattttggtccctctatcaaatattttgtctaaaatattgtgatatgttatatt 6196821  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    ||||||||||  ||||||  |||||  |||  |||||||| |||||||| ||||    
T  6196822 ttaaatgaagttttcaagggaatttcgttataatttcattaatgttgatctttt 6196875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 111 - 191
Target Start/End: Complemental strand, 33447011 - 33446931
Alignment:
Q  111 tttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcat 191  Q
    ||||||||||||||||||||||||||| ||||||| |||||||| ||| |||  || ||||||||||  ||||||||||||    
T  33447011 tttatctaatattttgtctaaaatatgttgatatatcatgtttttaattaagtttttaagaaaatttctttacgatttcat 33446931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 2237047 - 2236938
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||||  |||||||||||| || ||| |||||  | || ||| |||||| ||||  |||||||||||||||||| ||||||| | || ||    
T  2237047 attttcatcattttgcgaaattggtccccataattttaaattttataattttgatccctctatcacatattttgtctaaaatattatgatatgatatatt 2236948  T
Q  153 ttaaatgaag 162  Q
    ||||||||||    
T  2236947 ttaaatgaag 2236938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 4838110 - 4838001
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||||  |||||||||||| |||||||||| |  |||| |||  ||| | |||| |||||||||| ||||||||  |||||| | |||||    
T  4838110 attttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtccatctatcaaatattttgtttaaaatattgtgatatgatatgtt 4838011  T
Q  153 ttaaatgaag 162  Q
    ||||||||||    
T  4838010 ttaaatgaag 4838001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 12480423 - 12480532
Alignment:
Q  127 tctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatatac 226  Q
    ||||||||||| |||||| | |||||| ||||||||  || ||   |||| ||||||||||||||||| ||||||||||||  | ||||| || ||||||    
T  12480423 tctaaaatatggtgatatgatatgtttaaaatgaagtttttaaaggaattatcttacgatttcattgacgttgatattttcctatcttcaaatcatatac 12480522  T
Q  227 cacgacattt 236  Q
    ||| ||||||    
T  12480523 cacaacattt 12480532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 6198144 - 6198102
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    ||||||||||||||||| ||||||||||| |||||||||||||    
T  6198144 attttcaccattttgtagaattggtccccctattttaaaattc 6198102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 33819887 - 33820007
Alignment:
Q  113 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 212  Q
    |||| |||||||||||||||||||  |||||  | |||||||||||||||  || |||  |||||| |||| ||||||| ||| ||||| ||||  || |    
T  33819887 tatcaaatattttgtctaaaatattgtgatacgatatgttttaaatgaagtttttaagggaattttattacaatttcatcgatattgatctttttccatc 33819986  T
Q  213 ttcatattatataccacgaca 233  Q
    || |||| |||| ||||||||    
T  33819987 tttatatcatattccacgaca 33820007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Original strand, 35187570 - 35187612
Alignment:
Q  118 aatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    ||||||| |||||||||| ||||| ||||||||||||||||||    
T  35187570 aatatttcgtctaaaatacgatgacataacatgttttaaatga 35187612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 28587639 - 28587680
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    |||||||||||||| ||| ||||||||| |||||||||||||    
T  28587639 ttttcaccattttgcaaatttggtccccctattttaaaattc 28587680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 2145556 - 2145600
Alignment:
Q  118 aatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    ||||||| | ||||||||||||||||| | |||||||||||||||    
T  2145556 aatatttaggctaaaatatgatgatatgatatgttttaaatgaag 2145600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 236
Target Start/End: Complemental strand, 40324543 - 40324370
Alignment:
Q  63 ttttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    |||||||||||| ||| || ||||||||||||| |||  ||| |||  | |||||||  ||||||||||||||||||||||||||| ||||||||||  |    
T  40324543 ttttgtaaaattagtctccctattttaaaattcgacagttttgatcattctatctaaatttttgtctaaaatatgatgatataacaagttttaaatggtg 40324444  T
Q  163 cattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
      ||||||| |||||||||| |||||||| |||||||||||||||||  ||||  || ||||| ||||||||||    
T  40324443 ttttcaagagaattttcttatgatttcatcgatgttgatattttctcgtcttccgatcatatatcacgacattt 40324370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 13639672 - 13639519
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| ||||||| ||||||||||||| ||||||||||||| | || |||  ||||| ||||  ||||||||||||||||||  |||||| | |||||    
T  13639672 attttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtccctctatcatatattttgtctaaaatattgtgatatgatatgtt 13639573  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    ||||||||||  || ||||  ||||| |||| |||| || ||||||||||||||    
T  13639572 ttaaatgaagtttttaagagcattttgttacaattttatcgatgttgatatttt 13639519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 216
Target Start/End: Complemental strand, 39741574 - 39741411
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||||| || ||| || |||||||||||||||| | || ||| |||||| |||| |||||||||||||||||||  |||||| | |||||    
T  39741574 attttcatcattttgtgaatttgatctccttattttaaaattcgataattttgatccctctatcaaatattttgtctaaaatattgtgatatgatatgtt 39741475  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttca 216  Q
    ||||||||||  ||||||  |||||  |||  ||||||| ||||||||| |||| ||| |||||    
T  39741474 ttaaatgaagttttcaagggaatttcgttataatttcatcgatgttgatcttttttcatcttca 39741411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 236
Target Start/End: Original strand, 5548120 - 5548294
Alignment:
Q  62 attttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaa 161  Q
    ||||||| |||||||||||  ||||||||||||| |||| |||  |||||||||| |||||||||||||||||||   ||| | | ||||||||||||||    
T  5548120 attttgttaaattggtccctctattttaaaattcgacaattttggtccctttatcaaatattttgtctaaaatattgagatgtgatatgttttaaatgaa 5548219  T
Q  162 gcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
       || |||||||||||  ||| ||||||| ||||||||| |||| | | ||||| || |||| ||| |||||||    
T  5548220 atttttaagaaaattttgatacaatttcatcgatgttgatttttttttaacttcagatgatattccatgacattt 5548294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 61 - 198
Target Start/End: Original strand, 3577572 - 3577708
Alignment:
Q  61 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    ||||||| ||||||||||  | ||||||||||||| |||| |||  | ||| |||| ||||||||||||||||| |  |||||| | |||||||||||||    
T  3577572 cattttgcaaaattggtcttcctattttaaaattcgacaattttggtacctctatcaaatattttgtctaaaattttgtgatatgatatgttttaaatga 3577671  T
Q  161 agcattcaagaaaattttcttacgatttcattgatgtt 198  Q
    ||  ||||||  |||||| |||| ||||||| ||||||    
T  3577672 agttttcaag-gaattttgttacaatttcatcgatgtt 3577708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 236
Target Start/End: Original strand, 30223807 - 30223988
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    |||||| |||||||  |||||||||||   ||||| |||||| |||  |||  ||| | |||| |||||||||||||||||||  | |||| | ||||||    
T  30223807 ttttcatcattttgcgaaattggtccctcaatttttaaattcgacagttttggtccatctatcaaatattttgtctaaaatattgttatatca-atgttt 30223905  T
Q  154 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||  |||||   |||||| |||| |||||||  ||||| ||||||| ||| ||||| || |||| |||||||||||    
T  30223906 taaatgaagttttcaatggaattttgttacaatttcatccatgttaatattttttcatcttcagatcatattccacgacattt 30223988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 13361006 - 13361114
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    |||||||  ||||||  |||||| || |||||||||||||||| |||| ||| ||| || ||||  ||||||||||||||||||  |||||  | |||||    
T  13361006 attttcattattttgcgaaattgatctccttattttaaaattcgacaattttgatctctctatcacatattttgtctaaaatattgtgatacgatatgtt 13361105  T
Q  153 ttaaatgaa 161  Q
    |||||||||    
T  13361106 ttaaatgaa 13361114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 14626503 - 14626351
Alignment:
Q  84 attttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttac 183  Q
    |||||||||| | |||| ||| || ||| ||||  |||||||||||||||||   |||||| | |||||||||||||||  || ||   |||||| |||     
T  14626503 attttaaaatccgacaattttgattcctctatcacatattttgtctaaaatactgtgatatgatatgttttaaatgaagtttttaaaggaattttgttat 14626404  T
Q  184 gatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
     ||||||| ||||||||| |||||  | |||||||| |||| |||||||||||    
T  14626403 aatttcatcgatgttgatcttttcctatcttcatatcatattccacgacattt 14626351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 42552562 - 42552652
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgata 143  Q
    ||||||||||||||||| ||||||||||  ||||||||||||| |||  | | ||| |  || |  |||||||||||||||||||||||||    
T  42552562 attttcaccattttgtagaattggtccctgtattttaaaattcgacagttctgatctccctaacacatattttgtctaaaatatgatgata 42552652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 39917416 - 39917520
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    ||||||| ||||| |||||||||| || ||||||| ||| || |||  |||  |||||  ||| |||||||| ||||||||| | | |||||||||||||    
T  39917416 ttttcacaattttataaaattggttcctttattttcaaactcgacactttttgtccctcgatcaaatattttatctaaaatacggttatataacatgttt 39917515  T
Q  154 taaat 158  Q
    |||||    
T  39917516 taaat 39917520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Complemental strand, 3577832 - 3577791
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaatt 94  Q
    ||||||||||||||| | ||||||||||| ||||||||||||    
T  3577832 attttcaccattttgaagaattggtccccctattttaaaatt 3577791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 162
Target Start/End: Original strand, 37510290 - 37510339
Alignment:
Q  113 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    |||| ||||||  ||||||||||||||||||| |||||||||| ||||||    
T  37510290 tatcaaatattaggtctaaaatatgatgatatgacatgttttatatgaag 37510339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 3565677 - 3565498
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    |||||||| |||||| |||||||||  || | ||||| ||||| |||  |||   |||| ||||||||||||||||||||||||| ||||||||||||||    
T  3565677 attttcactattttgcaaaattggtttccctgttttataattcgacagttttggaccctctatctaatattttgtctaaaatatggtgatataacatgtt 3565578  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgac 232  Q
    ||||||||||  |||||   ||||||| || |||||||| |||||||||||||||| | ||||| || || |||||||||    
T  3565577 ttaaatgaagttttcaatgtaattttcctatgatttcatcgatgttgatattttcttatcttcaaatcatctaccacgac 3565498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 109 - 226
Target Start/End: Original strand, 27567407 - 27567524
Alignment:
Q  109 cctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttct 208  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||     |||||| ||||||||||||||||||||  ||||||||| |||||    
T  27567407 cctttatctaaaattttgtctaaaatatgatgatataacatgttttaaatggtattttcaaggaaattttcttacgatttcatccatgttgatactttct 27567506  T
Q  209 caccttcatattatatac 226  Q
    |  ||||| || ||||||    
T  27567507 cgtcttcagatcatatac 27567524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 236
Target Start/End: Complemental strand, 37327603 - 37327421
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    |||||| |||||||  |||||||||||| ||||||||||||  |||| |||  ||||| |||| ||| |||||||||||||||  |||||| | || |||    
T  37327603 ttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtccctctatcaaattttttgtctaaaatattgtgatatgatatattt 37327504  T
Q  154 taaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||  ||||||| |||||| || | |||| || |||||| || |||| |||  |||| || |||| |||||||||||    
T  37327503 taaatgaagttttcaagagaattttgttgcaattttatcgatgttaatcttttttcattttcagatcatattccacgacattt 37327421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 26472110 - 26472004
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    |||||||||||||  ||| ||||||||||   |||||||||| |||  ||| |||||||||| |||||||||| ||||||||||||||||||| || |||    
T  26472110 ttttcaccattttccaaatttggtccccta--tttaaaattcgacagttttgatccctttatataatattttgactaaaatatgatgatataatatattt 26472013  T
Q  154 taaatgaag 162  Q
    |||||||||    
T  26472012 taaatgaag 26472004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 162
Target Start/End: Complemental strand, 26548550 - 26548444
Alignment:
Q  54 ttttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttt 153  Q
    |||||||||||||  ||| ||||||||||   |||||||||| |||  ||| |||||||||| |||||||||| ||||||||||||||||||| || |||    
T  26548550 ttttcaccattttccaaatttggtccccta--tttaaaattcgacagttttgatccctttatataatattttgactaaaatatgatgatataatatattt 26548453  T
Q  154 taaatgaag 162  Q
    |||||||||    
T  26548452 taaatgaag 26548444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 218
Target Start/End: Complemental strand, 40717686 - 40717585
Alignment:
Q  117 taatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttca 216  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||  || || | |||||||||  ||||||||  ||||||| ||||||||| |||||    
T  40717686 taatattttatctaaaatatgatgatataacatgttttaaataaagtttttaatagaattttctttagatttcatcaatgttgacattttctcatcttca 40717587  T
Q  217 ta 218  Q
    ||    
T  40717586 ta 40717585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 45871760 - 45871839
Alignment:
Q  83 tattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaag 162  Q
    ||||||||||||| |||  |||  ||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  45871760 tattttaaaattcaacagttttggtccctctatataatattttgtctaaaatatggtgatataacatgttttaaatgaag 45871839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 29366598 - 29366475
Alignment:
Q  113 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 212  Q
    |||| |||||||||||||||||||  |||||| | ||||||||||| |||  ||||| | |||||| |||| ||||||| |||||||||| ||| ||| |    
T  29366598 tatcaaatattttgtctaaaatattgtgatatgatatgttttaaataaagttttcaacataattttgttacaatttcatcgatgttgataatttttcatc 29366499  T
Q  213 ttcatattatataccacgacattt 236  Q
    |||| || |||| ||| |||||||    
T  29366498 ttcaaatcatattccatgacattt 29366475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 81 - 201
Target Start/End: Original strand, 17298691 - 17298811
Alignment:
Q  81 cttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttct 180  Q
    ||||||||||||||  |||||| | ||| || |||| ||||||| ||||||||||||| | ||| ||||||||| |||||||  |  ||| || ||||||    
T  17298691 cttattttaaaatttgacaactctgatctctctatcaaatatttggtctaaaatatgaaggtatgacatgttttgaatgaagtttgtaagcaagttttct 17298790  T
Q  181 tacgatttcattgatgttgat 201  Q
    ||| ||||||||||| |||||    
T  17298791 tacaatttcattgatattgat 17298811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 206
Target Start/End: Original strand, 20896288 - 20896443
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatat--tttgtctaaaatatgatgatataacatg 150  Q
    |||||||  ||||| | ||||||||| |  ||||||||||||| | || |||  ||||| ||||  ||||  ||||||||||||||  |||||| | |||    
T  20896288 attttcataattttatgaaattggtcgcactattttaaaattcgataattttggtccctctatcacatataatttgtctaaaatattgtgatatgatatg 20896387  T
Q  151 ttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    ||||||||||||  || ||  ||||||| |||| ||||||| ||||||||||||||    
T  20896388 ttttaaatgaagtttttaaagaaattttgttacaatttcatcgatgttgatatttt 20896443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 27569363 - 27569417
Alignment:
Q  182 acgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |||||||||| |||||||||||||||||  ||||| || ||||||||||||||||    
T  27569363 acgatttcatcgatgttgatattttctcgtcttcagatcatataccacgacattt 27569417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 39751209 - 39751307
Alignment:
Q  62 attttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    |||||| |||||||||||||  |||||||||||| |||| |||  ||| |  ||| |||||||||| ||||||||| |||||  |||| ||||||||||    
T  39751209 attttgcaaaattggtccccccattttaaaattctacaattttggtccttccatcaaatattttgtttaaaatatggtgatacgacatattttaaatga 39751307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 236
Target Start/End: Complemental strand, 46303847 - 46303686
Alignment:
Q  74 tggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaa 173  Q
    |||||| | ||||||||||||| |||| |||  ||||| ||||  || |||| ||||||||||  |||| | | |||||||||||||||  || |||| |    
T  46303847 tggtcctcctattttaaaattcgacaattttggtccctctatcatatgttttatctaaaatattgtgatgtgatatgttttaaatgaag-ttttaagata 46303749  T
Q  174 attttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    ||||| ||||  |||||| ||||||||| ||||   | |||||||| |||| |||||||||||    
T  46303748 attttgttacagtttcatcgatgttgatctttttctatcttcatatcatattccacgacattt 46303686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 40744691 - 40744582
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    |||||||||||||| | |||||| || || | |||||||||| || |  ||| | || || ||| ||||||| || ||||||||| |||||| |||||||    
T  40744691 attttcaccattttatgaaattgatctccctgttttaaaatttcaaaggtttgaccctttcatcaaatatttggtttaaaatatggtgatatgacatgtt 40744592  T
Q  153 ttaaatgaag 162  Q
    ||||||||||    
T  40744591 ttaaatgaag 40744582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 11752953 - 11752910
Alignment:
Q  118 aatattttgtctaaaatatgatgatataacatgttttaaatgaa 161  Q
    ||||||||||||||| |||  |||||||||||||||||||||||    
T  11752953 aatattttgtctaaattatagtgatataacatgttttaaatgaa 11752910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 23415976 - 23416092
Alignment:
Q  118 aatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcat 217  Q
    ||||||||||||||||||   |||||| |  ||||||||||||||  || ||||||||||| |||  ||||||| |||||||| |||||  || | |||     
T  23415976 aatattttgtctaaaatactgtgatatga--tgttttaaatgaagtttttaagaaaattttgttataatttcatcgatgttgaaatttttccatcatcag 23416073  T
Q  218 attatataccacgacattt 236  Q
    ||||||| ||| |||||||    
T  23416074 attatattccatgacattt 23416092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 29366368 - 29366415
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    |||| |||||||| |||||| ||||||||||||| |||||||||||||    
T  29366368 cccctattttcacaattttgcaaaattggtccccatattttaaaattc 29366415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 183
Target Start/End: Original strand, 44857848 - 44857969
Alignment:
Q  61 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    |||||||  |||||| ||||| ||||| ||||||| |||| |||  |||||  ||| ||||||| |||||||||||  |||| | | |||||||||||||    
T  44857848 cattttgcgaaattgatccccctattt-aaaattcgacaattttgttccctccatcaaatatttagtctaaaatattgtgatttgatatgttttaaatga 44857946  T
Q  161 agcattcaagaaaattttcttac 183  Q
    ||  |||||| ||||||| ||||    
T  44857947 agttttcaaggaaattttgttac 44857969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 112
Target Start/End: Original strand, 42055302 - 42055366
Alignment:
Q  47 tcccccattttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctt 112  Q
    ||||| ||||| ||||||||||| ||||||| ||||||||||||||||  |||  |||||||||||    
T  42055302 tcccctatttttaccattttgtagaattggt-cccttattttaaaatttgacagttttaatccctt 42055366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Original strand, 37327314 - 37327366
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattccacaa 100  Q
    |||| ||||||||||||||| | || |||||||| ||||||||||||| ||||    
T  37327314 cccctattttcaccattttgcagaaatggtccccctattttaaaattcgacaa 37327366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 236
Target Start/End: Original strand, 38216098 - 38216287
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtcccct-tattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataa 146  Q
    |||| ||||||  |||||||| ||||||||||||  ||||||||||||| |||| |||  || || |||| |||||||||||||||||||  |||||| |    
T  38216098 cccctattttcttcattttgtgaaattggtcccccctattttaaaattcgacaattttggtcgctctatcaaatattttgtctaaaatattgtgatatga 38216197  T
Q  147 catgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
     ||||||||||| |||  ||||||| |||||| |||| ||||||||||||||||| ||||  || |||||||| |||| |||| ||||||    
T  38216198 tatgttttaaataaagttttcaagagaattttgttacaatttcattgatgttgatttttttccatcttcatatcatattccacaacattt 38216287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 236
Target Start/End: Original strand, 39492307 - 39492490
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| ||||||| ||||||||||||| |||| |||||||| ||||  ||  ||||| |||| |||||||||||||||||||  |||||| | |||||    
T  39492307 attttcatcattttgcaaaattggtccccctattataaaattcgacaatgttggtccctctatcaaatattttgtctaaaatattgtgatatgatatgtt 39492406  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    | ||||||||  ||||||  |||||| |||| | |||||  |||||||| ||||  || ||||| ||||||| ||| |||||||    
T  39492407 tcaaatgaagttttcaagggaattttgttacaacttcatcaatgttgatcttttaccatcttcaaattatattccatgacattt 39492490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 61 - 236
Target Start/End: Complemental strand, 43071839 - 43071666
Alignment:
Q  61 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    |||||||| ||||||||||   ||||||||||||| |||| |||  ||| | |||| ||||||  |||||||||||  |||||| | |||||||||| ||    
T  43071839 cattttgtgaaattggtccatctattttaaaattcgacaattttggtccttctatcaaatatt--gtctaaaatattgtgatatgatatgttttaaacga 43071742  T
Q  161 agcattcaagaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    ||  ||||||| |||||| |||| ||||||| |||||| || ||||  || ||||| || |||| |||||||||||    
T  43071741 agttttcaagagaattttgttacaatttcatcgatgttaatctttttccatcttcaaatcatattccacgacattt 43071666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 49726649 - 49726526
Alignment:
Q  113 tatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatattttctcacc 212  Q
    |||| ||||||||||  | |||||  |||||| | || ||||||||||||  |||||||||||||| |||| ||||||| ||||||||| ||||  || |    
T  49726649 tatcaaatattttgtacagaatattgtgatatgatatattttaaatgaagttttcaagaaaattttgttacaatttcatcgatgttgatctttttacatc 49726550  T
Q  213 ttcatattatataccacgacattt 236  Q
    |||| ||||||| |||||||||||    
T  49726549 ttcaaattatattccacgacattt 49726526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 14742259 - 14742110
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||||  |||||||||||| ||||||||||||| |||| |||  ||||| |||| ||||  |||||||||||||  ||||||    ||||    
T  14742259 attttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtccctctatcaaata--ttgtctaaaatattgtgatat--gttgtt 14742164  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    ||||||||||  ||||||  |||||  |||| |||| || ||||||||| ||||    
T  14742163 ttaaatgaagttttcaagggaatttcgttacaattttatcgatgttgatttttt 14742110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 38216394 - 38216347
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  38216394 cccctattttcaccattttgcataattggtccccctattttaaaattc 38216347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 94
Target Start/End: Original strand, 39450637 - 39450683
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaatt 94  Q
    |||| ||||||||||||||| | ||||||||||| ||||||||||||    
T  39450637 cccctattttcaccattttgcagaattggtccccctattttaaaatt 39450683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 3979055 - 3979127
Alignment:
Q  126 gtctaaaatatgatgatataacatgttttaaatgaagcattcaagaaaattttcttacgatttcattgatgtt 198  Q
    |||||||||||  |||||| ||||||||||||||| |  || |||||| ||||||||| |||  |||||||||    
T  3979055 gtctaaaatatcctgatatgacatgttttaaatgatgtttttaagaaatttttcttacaattaaattgatgtt 3979127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 70 - 236
Target Start/End: Original strand, 21173 - 21338
Alignment:
Q  70 aaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatgaagcattcaa 169  Q
    |||||||||||| ||||||||||||| |||| |||  ||||| |||| |||||||||||||||||||  || ||| | || ||||||||||||  |||||    
T  21173 aaattggtccccctattttaaaattcgacaattttggtccctctatcaaatattttgtctaaaatattgtggtatgatat-ttttaaatgaagttttcaa 21271  T
Q  170 gaaaattttcttacgatttcattgatgttgatattttctcaccttcatattatataccacgacattt 236  Q
    |  |||||| |||| ||||||||||||||||| ||||  || |||||||| |||| |||||||||||    
T  21272 gggaattttgttacaatttcattgatgttgatctttttccatcttcatatcatattccacgacattt 21338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 21445 - 21398
Alignment:
Q  48 cccccattttcaccattttgtaaaattggtccccttattttaaaattc 95  Q
    |||| ||||||||||||||| | ||||||||||| |||||||||||||    
T  21445 cccctattttcaccattttgcagaattggtccccctattttaaaattc 21398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 53 - 206
Target Start/End: Complemental strand, 17835 - 17682
Alignment:
Q  53 attttcaccattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgtt 152  Q
    ||||||| |||||||||||||||||| |  | |||||||||||||||| |||  ||  | |||| |||||||||||||||||||  |||||| | |||||    
T  17835 attttcatcattttgtaaaattggtctctctgttttaaaattccacaattttggtcattctatcaaatattttgtctaaaatattgtgatatgatatgtt 17736  T
Q  153 ttaaatgaagcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    ||||||||||  ||||||| | |||| |||| ||||||| ||||||||| ||||    
T  17735 ttaaatgaagttttcaagatagttttattaccatttcatcgatgttgatctttt 17682  T

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Target: scaffold0062 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 20253 - 20393
Alignment:
Q  61 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    ||||||| ||||||| || ||||||||| |||||| | || |||  ||| | |||| |||||||||||||||||||  ||||     |||||||||||||    
T  20253 cattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtctaaaatattgtgat-----atgttttaaatga 20347  T
Q  161 agcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    |   |||||  ||||||| |||| |||||||  |||||||| ||||    
T  20348 aattttcaatgaaattttgttacaatttcatcaatgttgatctttt 20393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 206
Target Start/End: Original strand, 30421 - 30561
Alignment:
Q  61 cattttgtaaaattggtccccttattttaaaattccacaactttaatccctttatctaatattttgtctaaaatatgatgatataacatgttttaaatga 160  Q
    ||||||| ||||||| || ||||||||| |||||| | || |||  ||| | |||| |||||||||||||||||||  ||||     |||||||||||||    
T  30421 cattttgcaaaattgatctccttatttttaaattcgataattttggtccttctatcaaatattttgtctaaaatattgtgat-----atgttttaaatga 30515  T
Q  161 agcattcaagaaaattttcttacgatttcattgatgttgatatttt 206  Q
    |   |||||  ||||||| |||| |||||||  |||||||| ||||    
T  30516 aattttcaatgaaattttgttacaatttcatcaatgttgatctttt 30561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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