View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13540_low_13 (Length: 233)
Name: NF13540_low_13
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13540_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 3005041 - 3004843
Alignment:
| Q |
19 |
cataggtagcaaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgt |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3005041 |
cataggtagcaaaccgcagcacatcaccactgccaacacagttgaaccacatcagtctgttgtccgaaaaccgcaccagtcacaaccttaaagctttcgt |
3004942 |
T |
|
| Q |
119 |
ctcac---taaccacagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaag |
214 |
Q |
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||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3004941 |
ctcacttataaccacagacaactttctattccattgtcttttgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaag |
3004843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 54655040 - 54654845
Alignment:
| Q |
19 |
cataggtagcaaaccgcaacacatcaccactgccaacacagttgaaccacatcagtctgttgtctgaaaaccgcaccagtcacaaccttaaagctttcgt |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||| |
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| T |
54655040 |
cataggtagcaaaccgcagcacatcaccactgccaacacagttgaaccacaacagtctgctgtctgaaaaccgcactagtcacaaccttaaagctttcgt |
54654941 |
T |
|
| Q |
119 |
ctcactaaccacagacaactttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaag |
214 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54654940 |
ctcactaaccacagacagctttgtattccattgtcttctgaataagttttacctgaaacaaaaacataattttttataaaattagcatctccaaag |
54654845 |
T |
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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 20604611 - 20604535
Alignment:
| Q |
138 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaag |
214 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20604611 |
tttctatgccattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaag |
20604535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 138 - 213
Target Start/End: Complemental strand, 29310880 - 29310805
Alignment:
| Q |
138 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaa |
213 |
Q |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29310880 |
tttctattccattgtcttttaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaa |
29310805 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 138 - 214
Target Start/End: Complemental strand, 51649252 - 51649176
Alignment:
| Q |
138 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaag |
214 |
Q |
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||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51649252 |
tttctatgtcattgtcttctaaataagttttacctgaaacaaaaacataattttctataaaatttgcatctccaaag |
51649176 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 30847932 - 30848007
Alignment:
| Q |
138 |
tttctattccattgtcttctgaataagttttacctgaaacaaaaacataattttctataaaattagcatctccaaag |
214 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
30847932 |
tttctattccattgtcttctaaattagttttacctgaaacaaaaacataattttctataaaatttgc-tctccaaag |
30848007 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 180 - 214
Target Start/End: Complemental strand, 31449326 - 31449292
Alignment:
| Q |
180 |
aaacataattttctataaaattagcatctccaaag |
214 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
31449326 |
aaacataattttctataaaattagcatctccaaag |
31449292 |
T |
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