View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13540_low_3 (Length: 501)
Name: NF13540_low_3
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13540_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 138 - 491
Target Start/End: Complemental strand, 13975681 - 13975328
Alignment:
| Q |
138 |
tttctatcaaccttgtcatcaatatcacctttgatggctatcctcctggtcattcttctcttatctttttcttcaccttcattagctcttccttcttcgt |
237 |
Q |
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| T |
13975681 |
tttctatcaaccttgtcatcaatatcacctttgatggctatcctcctggtcattcttctcttatctttttcttcaccttcattagctcttccttcttcgt |
13975582 |
T |
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| Q |
238 |
ctccaagtttcgttccaaaagatagttttcttattgattgtggttctgaaaatgtagttactttacctgatggtagacaattcaaatcagatccacaagc |
337 |
Q |
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| T |
13975581 |
ctccaagtttcgttccaaaagatagttttcttattgattgtggttctgaaaatgtagttactttacctgatggtagacaattcaaatcagatccacaagc |
13975482 |
T |
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| Q |
338 |
aaattcatttttacaagctaaggatgattacaaagtttcagcaactgatgctgatgttccttcacctatatattcaactgctagaattttcattcaagaa |
437 |
Q |
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| T |
13975481 |
aaattcatttttacaagctaaggatgattacaaagtttcagcaactgatgctgatgttccttcacctatatattcaactgctagaattttcattcaagaa |
13975382 |
T |
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| Q |
438 |
gctaagtattcattccatttggttcagcctggttttcattggattcgccttcat |
491 |
Q |
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| T |
13975381 |
gctaagtattcattccatttggttcagcctggttttcattggattcgccttcat |
13975328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 84
Target Start/End: Complemental strand, 13975801 - 13975735
Alignment:
| Q |
18 |
acttataacatttctaaattttcataacctcaccctcaatnnnnnnnaggaggtatggggaagatag |
84 |
Q |
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| T |
13975801 |
acttataacatttctaaattttcataacctcaccctcaatcccccccaggaggtatggggaagatag |
13975735 |
T |
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