View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13540_low_4 (Length: 429)
Name: NF13540_low_4
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13540_low_4 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 5262212 - 5261820
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggggaaaa-ttgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5262212 |
aggagcttccttgcaaatataagggaagatggggtaaaaattgctggacaagtgtgcctacaagaacaacttttatttgatatttgtaaagaaagaacaa |
5262113 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
|||||||| |||||||||||| ||||||| || ||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||| | | |
|
|
| T |
5262112 |
tcaaaatatcaaacattgagttaggaaaaaacatattaaaggacaaactttgccataaaagagtacttattgtacttgatgatgtgaatacactagacaa |
5262013 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcaggtagagttgataaa |
316 |
Q |
| |
|
|| ||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||| ||| |
|
|
| T |
5262012 |
accgaatactttgtgtggaagtcgtgaatggtttggctcagggagcgtaataatcatcacaactagagatctggatttaatttcagggagagttgacaaa |
5261913 |
T |
|
| Q |
317 |
atttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagattttatt |
409 |
Q |
| |
|
|| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5261912 |
atatacaaaatgacaacaatgaatgaaaatgaatcaattgagctttttagttggaatgcattcaagaaagcgagtcctacaagagattttatt |
5261820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 5286192 - 5285843
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggggaaaa-ttgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5286192 |
aggagcttccttgcaaatataagggaagatggggcaaaaattgctggacaggtgggtctacaagaacaacttttatttgatatctgtaaagaaagaacaa |
5286093 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
||||||||||||||| ||||| ||||||| |||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
5286092 |
tcaaaataccaaacactgagttaggaaaaaacacattaaaggacaaactttgccataaaagagtacttattgtacttgatgatgtgaatacactagacca |
5285993 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcaggtagagttgataaa |
316 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
5285992 |
actgaatactttctgtggaagtcgtgaatggtttggctcagggagcgtaataatcatcacaactagagatttggatttactttcagggagagttgacaaa |
5285893 |
T |
|
| Q |
317 |
atttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttag |
366 |
Q |
| |
|
|| ||||| |||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
5285892 |
atatacaatatgacaacgatgaatgaaagtgaatcaattgagctttttag |
5285843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 17 - 425
Target Start/End: Original strand, 5445015 - 5445424
Alignment:
| Q |
17 |
caggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaaca |
115 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5445015 |
caggagcttcctcgcaaatattagggaaaatggaaagaaaaatgctggactcatgggtttacaagaacaacttttatttgatatctgcaaagaaagaaca |
5445114 |
T |
|
| Q |
116 |
atcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcc |
215 |
Q |
| |
|
||||| |||||||||||||||| ||||||| || ||||| |||| ||| ||||| |||||||||| |||||||||||||||||| |||| ||| || |
|
|
| T |
5445115 |
atcaagataccaaacattgagttaggaaaaagcatgttaaaagataaactcagccatacaagagtacttgttgtacttgatgatgtgaatacattagacc |
5445214 |
T |
|
| Q |
216 |
aactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcaggtagagttgataa |
315 |
Q |
| |
|
|||| |||||||| |||| ||||||||||||||||||||| |||||| ||||||| |||||||| |||||| || |||||||| ||| |||||||| || |
|
|
| T |
5445215 |
aacttaatactttctgtgcaagtcgtgaatggtttggctcagggagtataataataatcacaaccagagatatgcatttacttaaagggagagttgacaa |
5445314 |
T |
|
| Q |
316 |
aatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagattttattagagtt |
415 |
Q |
| |
|
||| | | ||||| ||| |||||||||||| || ||||| ||||||||||||| ||||||||||||| |||| ||||||||| ||||||| ||||| || |
|
|
| T |
5445315 |
aatattcgaaatgccaataatgaatgaaagtgagtcaatcgagctttttagttggaatgcattcaagcgagcgtgtcctacaaaagattttgttagaatt |
5445414 |
T |
|
| Q |
416 |
gccgaaaatg |
425 |
Q |
| |
|
|| |||||| |
|
|
| T |
5445415 |
tccaaaaatg |
5445424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 21 - 406
Target Start/End: Original strand, 5423689 - 5424078
Alignment:
| Q |
21 |
agcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatca |
119 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | ||| ||||||| ||||| |||||||||||||||| | |||||||| || ||||| | |||| || |
|
|
| T |
5423689 |
agcttccttgcaaatattagggaagtttgggaggaaaatgctggaaaagtgaatttacaagaacaacttctctttgatatatgcaaagatatgacaacca |
5423788 |
T |
|
| Q |
120 |
aaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaact |
219 |
Q |
| |
|
|||||| || |||||| | |||||| | ||| ||||||| ||| ||||| |||||||||| ||| |||||||||| || | |||| | | |||||| |
|
|
| T |
5423789 |
aaatacaaagcattgaattcggaaaacttgtattgaaggatagactctgccacaaaagagtactaattttacttgatgacgttaatacattggaccaact |
5423888 |
T |
|
| Q |
220 |
gaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcagg---tagagttgataaa |
316 |
Q |
| |
|
|||| |||| |||||||||| | |||||||||| || |||||| |||||| |||||||| |||||| || |||||| || ||| ||| ||||| |
|
|
| T |
5423889 |
gaatgctttgtgtggaagtcataaatggtttggttcggggagtagaataattatcacaacaagagatagacatatactttgtgggaatagggttcataaa |
5423988 |
T |
|
| Q |
317 |
atttacaaaatgacaaca-atgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagatttt |
406 |
Q |
| |
|
| | |||||||| |||| ||| ||||||| |||||||||||||| || |||| | |||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
5423989 |
gtattcaaaatga-aacacatggatgaaagtgaatcaattgagctattaagttggcatgccttcaagcaagcgagtcctacaaaagatttt |
5424078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 5093974 - 5094230
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg--gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaaca |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||| || ||| |||||| ||||| |||||||||||||||| | ||||| ||||||||||| | ||| |
|
|
| T |
5093974 |
aggagcttccttgcaaatgttagggaagtttgggatgagaat-gctggaaaagtgaatttacaagaacaacttctctttgacatctgtaaagatatgaca |
5094072 |
T |
|
| Q |
116 |
atcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcc |
215 |
Q |
| |
|
|||||||||| || |||||| |||||||||| ||||||||||| ||| |||| | |||||||||| ||| ||||||||||||| | |||| | | || |
|
|
| T |
5094073 |
atcaaaatacaaagcattgaaagtggaaaaatcatattaaaggatagactctgccgtaaaagagtactaattttacttgatgatgttaatacattggacc |
5094172 |
T |
|
| Q |
216 |
aactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat |
273 |
Q |
| |
|
|||| ||| |||| || ||||||| | |||||||||| | |||||| ||||||||| |
|
|
| T |
5094173 |
aactaaatgctttgtgcggaagtcataaatggtttggtccggggagtagaataatcat |
5094230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 5356682 - 5356416
Alignment:
| Q |
21 |
agcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatca |
119 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | ||| ||||| |||||| |||||||||||||||| | | ||||||||| ||||| | |||| || |
|
|
| T |
5356682 |
agcttccttgcaaatattagggaagtttgggaggaaaaagctggccaagtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaacca |
5356583 |
T |
|
| Q |
120 |
aaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaact |
219 |
Q |
| |
|
|||||| || |||||| |||||||||| ||||||||||| |||||| ||| |||||||||| ||||||||||||||||| | ||| | | |||||| |
|
|
| T |
5356582 |
aaatacaaagcattgaaaatggaaaaatcatattaaaggatagactttgtcataaaagagtactaattgtacttgatgatgttaatactttggaccaact |
5356483 |
T |
|
| Q |
220 |
gaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagat |
286 |
Q |
| |
|
|||| ||| ||||| |||| | | |||||||| | |||||| |||||| |||||||| |||||| |
|
|
| T |
5356482 |
gaatgttttgtgtggcagtcatcattggtttggtttggggagtagaataattatcacaacaagagat |
5356416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 21 - 279
Target Start/End: Complemental strand, 5104938 - 5104679
Alignment:
| Q |
21 |
agcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatca |
119 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | ||| || ||| | ||| |||||||||| ||||| | ||||||||||| ||||||| ||||| | |
|
|
| T |
5104938 |
agcttccttgcaaatattagggaagtttgggagcaaaatgttggccgggtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataa |
5104839 |
T |
|
| Q |
120 |
aaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaact |
219 |
Q |
| |
|
|||||| || |||| ||||||| || ||||||||||| ||| |||||| |||||||| | ||||||||||||||||| | |||||| | |||||| |
|
|
| T |
5104838 |
aaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaact |
5104739 |
T |
|
| Q |
220 |
gaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaac |
279 |
Q |
| |
|
| || |||| ||||||||| || |||||||||| || |||||| ||||||||| ||||| |
|
|
| T |
5104738 |
ggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaac |
5104679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 5133974 - 5133718
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg---gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| |||| || ||| ||||||| ||||||||||||||| | ||||||||| ||||||| || |
|
|
| T |
5133974 |
aggagcttccttgcaaatattagggaagtttgggagcgaaattt--tggtcaagtggaattacaagaacaacttctgtttgatatcaacaaagaaatgac |
5133877 |
T |
|
| Q |
115 |
aatcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggc |
214 |
Q |
| |
|
|| || |||| |||||||||||| ||||||| | |||||||||| ||| || ||| |||||||| | ||||||||||||||||| | ||| || | |
|
|
| T |
5133876 |
aactaagatacaaaacattgagtcaggaaaaaatattttaaaggatagactctggcataaaagagtattaattgtacttgatgatgtaaatactctggaa |
5133777 |
T |
|
| Q |
215 |
caactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat |
273 |
Q |
| |
|
||| ||||| |||| ||||||||| || |||||||||| || |||||| ||||||||| |
|
|
| T |
5133776 |
caaatgaatgctttgtgtggaagtagtaaatggtttggttcagggagtcgaataatcat |
5133718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 5368396 - 5368661
Alignment:
| Q |
21 |
agcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatca |
119 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | ||| ||||||| ||||| |||||||||||||||| | ||||||||||| ||||| | ||| || |
|
|
| T |
5368396 |
agcttccttgcaaatattagggaagtttgggaggaaaatgctggaaaagtgaatttacaagaacaacttctctttgatatctgcaaagatatggcaacca |
5368495 |
T |
|
| Q |
120 |
aaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaact |
219 |
Q |
| |
|
|||| | || |||||| | |||||||||| ||||||||||| ||| |||||| |||||||| | || |||| ||||| || | |||| | | |||||| |
|
|
| T |
5368496 |
aaattcaaagcattgaatgcggaaaaatcatattaaaggatagactctgccataaaagagtattaatattactcgatgacgttaatacattggaccaact |
5368595 |
T |
|
| Q |
220 |
gaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagaga |
285 |
Q |
| |
|
||| |||| |||||||||||| | |||||||| || || || |||||||||||| || ||||| |
|
|
| T |
5368596 |
aaatgctttgtgtggaagtcgtaagtggtttggttcgggaagcagaataatcatcaccacaagaga |
5368661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 5075800 - 5075419
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||| | ||| || ||||| || ||||||||||||||||| | |||||||| || ||||| | | || |
|
|
| T |
5075800 |
aggagcttccttgcaaatatcagggaagtttgggagcaaaatgatggaccggtttgtttacaagaacaacttctttttgatatttgcaaagatacgaaaa |
5075701 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
|| |||| || |||||||||||||||| | ||||| ||||| ||| || ||| ||||| | |||||||||||||||||||||||| | | | || |
|
|
| T |
5075700 |
ctaagatacgaagtattgagtcgggaaaaactatattaatggatagactatgtcataaaagaattcttattgtacttgatgatgtgagtgaattggagca |
5075601 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcagg---tagagttgat |
313 |
Q |
| |
|
| ||||| |||| || |||| |||| ||||| || | || |||||| |||||| |||||||| || ||| || || ||||| ||| ||||||||| |
|
|
| T |
5075600 |
attgaatgctttgtgcggaaatcgtaaatggcttagttcagggagtagaataattatcacaaccagggatatgcatatacttagagggaatagagttgac |
5075501 |
T |
|
| Q |
314 |
aaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtccta |
395 |
Q |
| |
|
|| | | |||||||| | |||| ||||||| |||||||||||||||||||||| | |||||||||| |||| ||||||| |
|
|
| T |
5075500 |
caagtgtgcaaaatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaaacaagcaagtccta |
5075419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 149 - 395
Target Start/End: Complemental strand, 5148896 - 5148647
Alignment:
| Q |
149 |
acattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggt |
248 |
Q |
| |
|
||||||||||||| ||| || | ||||||||||| |||||||||||||||||||||| | | ||| ||| | |||| |||||||||||| |||||| |
|
|
| T |
5148896 |
acattaaaggatagactctgtggtaaaagagtacttcttgtacttgatgatgtgagtacgttggatcaattgactgctttgtgtggaagtcgtcaatggt |
5148797 |
T |
|
| Q |
249 |
ttggctctgggagtgtaataatcatcacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaag |
345 |
Q |
| |
|
||||||| || ||| |||||| ||||||||||||||| || || |||| ||| ||||||||| | | |||||||||| | |||| ||||| | |
|
|
| T |
5148796 |
ttggctcgggaagtagaataattatcacaactagagatatgcatatactgagagggaatagagttgaccatgtatacaaaatgaaagaaatggatgaagg |
5148697 |
T |
|
| Q |
346 |
agaatcaattgagctttttagttagaatgcattcaaggaagcgagtccta |
395 |
Q |
| |
|
||||||||| ||||||||||| | ||||||||||| |||||||||||| |
|
|
| T |
5148696 |
tgaatcaattatgctttttagttggcatgcattcaagcaagcgagtccta |
5148647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 5159570 - 5159314
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg--gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaaca |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||| | ||| || ||| |||||| ||||| |||||| ||||||||| | ||||| |||| ||||| | || |
|
|
| T |
5159570 |
aggagcttccttgcaaatgttagggaagtttgggatgagaat-gctggaaaagtgaatttacaggaacaacttctctttgacatctacaaagatatgacg |
5159472 |
T |
|
| Q |
116 |
atcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcc |
215 |
Q |
| |
|
|||||||||| || |||||| |||||||||| ||||||||||| ||| |||||| |||||||||| ||| |||| ||||| || | |||| | | || |
|
|
| T |
5159471 |
atcaaaatacaaagcattgaaagtggaaaaatcatattaaaggatagactctgccataaaagagtactaattttactcgatgacgttaatacattggacc |
5159372 |
T |
|
| Q |
216 |
aactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat |
273 |
Q |
| |
|
|||| ||| |||| || ||||||| | |||||||||| ||||||||| ||||||||| |
|
|
| T |
5159371 |
aactaaatgctttgtgcggaagtcataaatggtttggttctgggagtagaataatcat |
5159314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 5394976 - 5395355
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaaga-tgggggaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaa-gaaca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | ||| || ||||| || | |||||| |||||||| | |||||||| || ||||||| ||| | |
|
|
| T |
5394976 |
aggagcttccttgcaaatattagggaagtgtgggagcaaaatgttggaccggttgacttacaaaaacaacttctctttgatatttgcaaagaaacgaaga |
5395075 |
T |
|
| Q |
116 |
atcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcc |
215 |
Q |
| |
|
| || |||| |||||||||||| || |||| | | |||||| || | | | |||| ||||||||||| | ||||||||||||||| |||| | | | |
|
|
| T |
5395076 |
ct-aagatacaaaacattgagtcagggaaaagtatactaaagggtagattcttccataaaagagtacttctaatacttgatgatgtgaatacatttgaac |
5395174 |
T |
|
| Q |
216 |
aactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcaggta---gagttga |
312 |
Q |
| |
|
|||| ||| | || |||||||||||| | ||| |||| || ||||| |||||||||||||| ||||||| || | ||||| ||||| ||||||| |
|
|
| T |
5395175 |
aactaaatgcattgtgtggaagtcgtaattggcttggttcagggagcagaataatcatcacaagtagagatatgaacatacttagaggtaatagagttga |
5395274 |
T |
|
| Q |
313 |
taaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcc |
393 |
Q |
| |
|
||||||||||||||| | |||| | | ||| |||||||||||||| ||||||| | ||||||||||| |||||||||| |
|
|
| T |
5395275 |
ccaaatttacaaaatgaaagaaatggacggaagcgaatcaattgagctctttagttggcatgcattcaagcaagcgagtcc |
5395355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 153 - 387
Target Start/End: Complemental strand, 5183885 - 5183648
Alignment:
| Q |
153 |
taaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttgg |
252 |
Q |
| |
|
||||||||| ||| | |||| ||||||||||| | |||||||||||||||| |||| | | |||||||||| |||| |||||||| || ||| |||| |
|
|
| T |
5183885 |
taaaggatagactcttccataaaagagtacttctggtacttgatgatgtgaatacatttgaccaactgaatgctttgtgtggaaggagtatttggcttgg |
5183786 |
T |
|
| Q |
253 |
ctctgggagtgtaataatcatcacaactagagatttggatttactttcaggta---gagttgataaaatttacaaaatgacaacaatgaatgaaagagaa |
349 |
Q |
| |
|
| ||||| ||||||||||||||||||| || || | ||||| ||||| ||||||| || |||||||||||| || |||| ||||||| ||| |
|
|
| T |
5183785 |
tccagggagcagaataatcatcacaactagaaatatgaaaatacttagaggtaatagagttgaccaagtttacaaaatgaaaataatggatgaaagcgaa |
5183686 |
T |
|
| Q |
350 |
tcaattgagctttttagttagaatgcattcaaggaagc |
387 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||| |||| |
|
|
| T |
5183685 |
tcaattgagctatttagttggcatgcattcaagcaagc |
5183648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 73 - 286
Target Start/End: Original strand, 5341683 - 5341896
Alignment:
| Q |
73 |
tttacaagaacaacttttatttgatatctgtaaagaaagaacaatcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccat |
172 |
Q |
| |
|
||||||||||| |||| | || |||||||| ||||||| ||||| || |||| ||||||||||||||||||| | | ||||||||||| ||| || ||| |
|
|
| T |
5341683 |
tttacaagaacgacttcttttcgatatctgcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctgtcat |
5341782 |
T |
|
| Q |
173 |
gaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatca |
272 |
Q |
| |
|
| | | ||||| ||||||| |||||||||| | || | | ||||||||| |||||||||| ||| | |||||||| || |||||| |||| ||| |
|
|
| T |
5341783 |
aagaaaatacttcttgtactagatgatgtgaattcattggaccaactgaaagctttatgtggtgagcgtaattggtttggttcagggagtaaaatagtca |
5341882 |
T |
|
| Q |
273 |
tcacaactagagat |
286 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5341883 |
tcacaactagagat |
5341896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 21 - 275
Target Start/End: Original strand, 5348347 - 5348602
Alignment:
| Q |
21 |
agcttccttgcaaatattagggaagatgggggaaa-attgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatca |
119 |
Q |
| |
|
||||||||||||||||||||||||| | ||| | | | ||| | ||||| ||||||| |||||||| | ||||| ||||| ||||| | |||| || |
|
|
| T |
5348347 |
agcttccttgcaaatattagggaagtttgggatgagactactgaaaaagtgaatttacaaaaacaacttctgtttgacatctgcaaagatatgacaacca |
5348446 |
T |
|
| Q |
120 |
aaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaact |
219 |
Q |
| |
|
| |||| || |||||| |||||||||| ||||||||||| ||| |||||| |||||||||| ||||| ||||||||||| | |||| | | |||| | |
|
|
| T |
5348447 |
atatacaaagcattgaaagcggaaaaatcatattaaaggatagactctgccataaaagagtactaattgttcttgatgatgttaatacattggaccaatt |
5348546 |
T |
|
| Q |
220 |
gaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatca |
275 |
Q |
| |
|
||| |||| || |||||| || |||||||||| || |||||| ||| ||||||| |
|
|
| T |
5348547 |
aaatgctttgtgcggaagttgtaaatggtttggttcggggagtagaattatcatca |
5348602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 5692180 - 5691911
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||| | || | ||| || ||||||||| |||||| |||||||| | | ||||| || ||||||| ||| | |
|
|
| T |
5692180 |
aggagcttccttgcaaatataagggaagtttggatgcaaaatgttggacaagtatctttacagcaacaacttctctccgatatttgcaaagaaacaacga |
5692081 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
||| |||| ||||||||| | ||||||| ||||||| ||||| ||| |||||| ||| |||||||||||||| ||||||||||||||| | || |
|
|
| T |
5692080 |
ccaatatacaaaacattgatgcaggaaaaaatacattaatggatagactctgccataaaaaggtacttattgtactggatgatgtgagtacatctgatca |
5691981 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagat |
286 |
Q |
| |
|
| ||||| |||| |||||| | ||||||||||||| | || ||| |||||| || |||||||||||| |
|
|
| T |
5691980 |
attgaatgctttgtgtggatcttgtgaatggtttggtcccggcagtagaataattataacaactagagat |
5691911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 409
Target Start/End: Complemental strand, 5104616 - 5104546
Alignment:
| Q |
339 |
atgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagattttatt |
409 |
Q |
| |
|
||||||| |||||||||||||| ||||||| | ||||||||||| ||| |||||| |||| |||||||||| |
|
|
| T |
5104616 |
atgaaagtgaatcaattgagctatttagttggcatgcattcaagcaagtgagtccgacaaaagattttatt |
5104546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 140 - 406
Target Start/End: Complemental strand, 5069020 - 5068751
Alignment:
| Q |
140 |
ggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtc |
239 |
Q |
| |
|
||||||| || ||||||||||| ||| |||| |||||||||| ||| |||| ||||| || | |||| | | |||||| ||| |||| |||||||||| |
|
|
| T |
5069020 |
ggaaaaaccatattaaaggatagactcagccagaaaagagtactaattttactcgatgacgttactacattggaccaactaaatgctttgtgtggaagtc |
5068921 |
T |
|
| Q |
240 |
gtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaaca-a |
335 |
Q |
| |
|
|| | |||||||| || || ||| |||||||||||| || || ||| || ||||| || ||||||| ||||| | | |||||||| |||| | |
|
|
| T |
5068920 |
gtaagtggtttggttcgggaagtagaataatcatcaccacaagggatagacatatacttcgtgggaatagagttaataaagtattcaaaatga-aacaca |
5068822 |
T |
|
| Q |
336 |
tgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagatttt |
406 |
Q |
| |
|
|| ||||||| ||||||||| |||| ||||||| | | ||||||||| ||||| ||||||||| ||||||| |
|
|
| T |
5068821 |
tggatgaaagtgaatcaattaagctatttagttggcacgcattcaagcaagcgggtcctacaaaagatttt |
5068751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 339 - 398
Target Start/End: Complemental strand, 5159245 - 5159186
Alignment:
| Q |
339 |
atgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaa |
398 |
Q |
| |
|
||||||| |||||||||||||| ||||||| | | ||||||||| ||||||||||||||| |
|
|
| T |
5159245 |
atgaaagtgaatcaattgagctatttagttggcacgcattcaagcaagcgagtcctacaa |
5159186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 340 - 398
Target Start/End: Original strand, 5094300 - 5094358
Alignment:
| Q |
340 |
tgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaa |
398 |
Q |
| |
|
|||||| |||||||||||| | ||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
5094300 |
tgaaagtgaatcaattgagttatttagttggcatgcattcaagcaagcgagtcctacaa |
5094358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 5174799 - 5174889
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagat-gggggaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaag |
107 |
Q |
| |
|
||||||||| || | ||||||||||||| | ||||| || |||||||||||||| ||||||| |||||||| ||| |||||||| ||||| |
|
|
| T |
5174799 |
aggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaag |
5174889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 405
Target Start/End: Complemental strand, 5356352 - 5356294
Alignment:
| Q |
347 |
gaatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagattt |
405 |
Q |
| |
|
|||||||||||||| ||||||| | ||||||||||| |||| |||||||||| |||||| |
|
|
| T |
5356352 |
gaatcaattgagctatttagttggcatgcattcaagcaagcaagtcctacaaaagattt |
5356294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 196
Target Start/End: Original strand, 5381584 - 5381757
Alignment:
| Q |
24 |
ttccttgcaaatattaggg-aagatgggggaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatcaaaa |
122 |
Q |
| |
|
||||||||||||||||||| || ||||| | | | || |||| ||||| |||||||||||||||| | |||||| ||| ||| ||| ||| | || | |
|
|
| T |
5381584 |
ttccttgcaaatattagggaaacatgggagcatactgatggaaaagtgtctttacaagaacaacttctgtttgatgtcttcaaaaaaacaactacaaaga |
5381683 |
T |
|
| Q |
123 |
taccaaacattgagtc-gggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgat |
196 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||||||| || | || | ||||||||| ||||||||||| |
|
|
| T |
5381684 |
taccaaacatcgagtctgggaaaaat-acattaaaggatatgctccgtgataagagagtacttcttgtacttgat |
5381757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 388 - 425
Target Start/End: Complemental strand, 5285838 - 5285801
Alignment:
| Q |
388 |
gagtcctacaagagattttattagagttgccgaaaatg |
425 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5285838 |
gagtcctacaagagattttattagagttaccgaaaatg |
5285801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 22586384 - 22586014
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | || || | ||||| ||| |||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
22586384 |
aggagcttccttgcaaatattagggaagtttggaagcaagatggtagacaaatggttttacaagaacaacttttatctgatatctgtaaagaaataac-- |
22586287 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
||||||| || ||||||| |||||||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
22586286 |
-caaaatatcatacattgacaagggaaaaaacacattaaaggataaactttgcggtaaaagagtacttattgtacttgatgatgtgagtaccctagacca |
22586188 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcaggtagagttgataaa |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||| |||||||| | | |
|
|
| T |
22586187 |
actgaatactttatgtgcaagtcgtgaatggtttggcaaagggagtgtaataatcatcacaacaagagatttggttttactcagagggagagttgacaga |
22586088 |
T |
|
| Q |
317 |
atttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgag |
390 |
Q |
| |
|
|| |||| ||||||| |||||||||||| || ||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
22586087 |
atatacataatgacagtaatgaatgaaagtgagtcaattgagctttttagttggaatgcattcaagcaagcgag |
22586014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 47 - 382
Target Start/End: Complemental strand, 36215931 - 36215593
Alignment:
| Q |
47 |
tgggggaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaatcaaaataccaaacattgagtcgggaaaaa |
146 |
Q |
| |
|
|||| ||||| || |||||||||| ||||||| |||||||| | |||||||| || ||||||| |||| |||||||| || |||||| | ||||||| |
|
|
| T |
36215931 |
tgggagaaaaatgttggacaagtgtctttacaacaacaacttctctttgatatttgcaaagaaacgacaaccaaaatacaaagtattgaggcaggaaaaa |
36215832 |
T |
|
| Q |
147 |
tcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatg |
246 |
Q |
| |
|
| | |||||| |||| ||| || | ||||||||||| ||||||||||||| ||||||||| | | ||| | ||| |||| |||||||||||| |||| |
|
|
| T |
36215831 |
ttatattaaaagatagactatgtggtaaaagagtacttcttgtacttgatgacgtgagtacattggatcaatttaatgctttgtgtggaagtcgtcaatg |
36215732 |
T |
|
| Q |
247 |
gtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaa |
343 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||| | || ||||| ||| ||||||||| || | ||| ||||| | |||| ||||| |
|
|
| T |
36215731 |
gtttggtgtggggagtagaataatcatcacaactagagataggcatatacttagagggaatagagttgaccaagtatacgcaatgaaagaaatggatgaa |
36215632 |
T |
|
| Q |
344 |
agagaatcaattgagctttttagttagaatgcattcaag |
382 |
Q |
| |
|
|| |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
36215631 |
agtgaatcaattgagctttttagttggcatgcattcaag |
36215593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 382
Target Start/End: Original strand, 4351164 - 4351530
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
||||| || ||||||||||||||||| | ||||| | || || |||||||| | ||||||| |||||||| || |||||| | ||||||| ||||| |
|
|
| T |
4351164 |
aggagttttcttgcaaatattagggaggttggggagcaagtttctggacaacagcatttacaaaaacaacttatagatgatattttcaaagaaacaacaa |
4351263 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
|| |||| ||||||||||||||||||| | ||||||||| | ||| || ||| |||||| || |||||||||| ||||||| || | | | ||| |
|
|
| T |
4351264 |
caaagatacaaaacattgagtcgggaaaatctatattaaaggaaagactctgtcat--aagagttctccttgtacttgacgatgtgaataaattggacca |
4351361 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcag---gtagagttgat |
313 |
Q |
| |
|
||| |||||||| ||||||||| || ||||||||| |||||||| ||||||||||||||| || ||| ||||| ||||| || | |||||| |
|
|
| T |
4351362 |
acttaatactttgtgtggaagttgtaaatggtttgctcctgggagtagaataatcatcacaaccagggatatggatatacttagagcgaaaaaagttgac |
4351461 |
T |
|
| Q |
314 |
aaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaag |
382 |
Q |
| |
|
|| || ||| |||||| | |||||||||||| ||||| |||||| |||||||| | ||||||||||| |
|
|
| T |
4351462 |
aagatatacgaaatgaaagaaatgaatgaaagtgaatctcttgagcgttttagttggcatgcattcaag |
4351530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 174 - 395
Target Start/End: Complemental strand, 4323014 - 4322790
Alignment:
| Q |
174 |
aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat |
273 |
Q |
| |
|
||||||||||| |||||||||| ||||||| || ||| | ||| || ||| |||| ||||||||| || ||||||||| | || ||| ||||||||| |
|
|
| T |
4323014 |
aaagagtacttcttgtacttgacgatgtgaataaactggaccagctaaatgctttgtgtggaagttgtaaatggtttgctccaggtagtagaataatcat |
4322915 |
T |
|
| Q |
274 |
cacaactagagatttggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttag |
370 |
Q |
| |
|
||||||||||||| | || ||||| ||| ||| ||||| ||||| |||| ||||| | |||| ||||||| ||||| ||||||||||||||| | |
|
|
| T |
4322914 |
cacaactagagataagcatatacttagaggaaatagggttgacaaaatatacataatgaaagaaatggatgaaagtgaatctcttgagctttttagttgg |
4322815 |
T |
|
| Q |
371 |
aatgcattcaaggaagcgagtccta |
395 |
Q |
| |
|
||||||||||| ||||||| |||| |
|
|
| T |
4322814 |
catgcattcaagcaagcgaggccta |
4322790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 4126506 - 4126125
Alignment:
| Q |
18 |
aggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaacaa |
116 |
Q |
| |
|
|||||||| ||||||||||| ||||| | | ||| | || || ||||||||||| |||||||||||||||| | | |||||| | ||||||| |||| |
|
|
| T |
4126506 |
aggagctttcttgcaaatataagggaggtttgggagcaagtttctggacaagtgtatttacaagaacaacttatgtatgatattttcaaagaaaccacaa |
4126407 |
T |
|
| Q |
117 |
tcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcca |
216 |
Q |
| |
|
||| || | ||| ||||| || || ||| | ||||||||| |||||| ||| ||||||| ||| |||||||||| ||||||| || | | | ||| |
|
|
| T |
4126406 |
ccaagattcaaaatattgaatcagggaaatctatattaaaggaacgactttgtcataaaagagttcttcttgtacttgacgatgtgaataaattggacca |
4126307 |
T |
|
| Q |
217 |
actgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatttggatttactttcagg---tagagttgat |
313 |
Q |
| |
|
||| ||| |||| ||||||||| || ||||||||| | |||||| |||||||||||| || || ||| | || ||||| ||| ||||||||| |
|
|
| T |
4126306 |
actcaatgctttgtgtggaagttgtaaatggtttgctccagggagtagaataatcatcacgaccagggataagcatatacttcgaggggatagagttgac |
4126207 |
T |
|
| Q |
314 |
aaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaaggaagcgagtccta |
395 |
Q |
| |
|
||||| |||| ||||| | |||| ||||||| ||||| |||| |||||||||| | |||| |||||| || ||||||||| |
|
|
| T |
4126206 |
aaaatatacataatgaaagaaatggatgaaagtgaatctcttgaactttttagttggcatgctttcaagcaaacgagtccta |
4126125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 387
Target Start/End: Original strand, 25568096 - 25568298
Alignment:
| Q |
188 |
gtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagatt |
287 |
Q |
| |
|
|||||||||||||||| |||| | | ||| ||||| |||| |||||| ||||| |||||||||| || || ||| |||| ||||||| ||||||||| |
|
|
| T |
25568096 |
gtacttgatgatgtgaatacattggatcaattgaatgctttgtgtggacgtcgtcaatggtttggttcgggtagtagaatagtcatcaccactagagata |
25568195 |
T |
|
| Q |
288 |
tggatttactttcagg---tagagttgataaaatttacaaaatgacaacaatgaatgaaagagaatcaattgagctttttagttagaatgcattcaagga |
384 |
Q |
| |
|
|| | | ||| ||| |||||||||| |||| |||| ||||| | |||| |||||| |||||||||||||||||||| | | ||||||||||| | |
|
|
| T |
25568196 |
tgaacattcttagaggatatagagttgatcaaatatacacaatgaaagaaatgtgtgaaagtgaatcaattgagctttttagctggcatgcattcaagca |
25568295 |
T |
|
| Q |
385 |
agc |
387 |
Q |
| |
|
||| |
|
|
| T |
25568296 |
agc |
25568298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 406
Target Start/End: Original strand, 4333619 - 4333877
Alignment:
| Q |
151 |
attaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggttt |
250 |
Q |
| |
|
||||||||| | ||| || ||| ||||||| |||||||||||||| ||||| | || | | | |||||| |||| | | |||||||||||| |||||||| |
|
|
| T |
4333619 |
attaaaggacagactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaagtcgtaaatggttt |
4333718 |
T |
|
| Q |
251 |
ggctctgggagtgtaataatcatcacaactagagatttggatttactttca---ggtagagttgataaaatttacaaaatgacaacaatgaatgaaagag |
347 |
Q |
| |
|
| |||||||| ||||||||| |||||||| ||| | || |||| | | ||||||||| |||| ||| ||||| | |||| ||||||| | |
|
|
| T |
4333719 |
gctcctgggagtagaataatcattacaactagggataagcatatactgagaagggatagagttgacaaaacatactcaatgaaagaaatggatgaaagtg |
4333818 |
T |
|
| Q |
348 |
aatcaattgagctttttagttagaatgcattcaaggaagcgagtcctacaagagatttt |
406 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||| || ||||||| ||| ||||||| |
|
|
| T |
4333819 |
aatctcttgagctttttagtttgcatgcattcaagcaaacgagtcccacagaagatttt |
4333877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 4342874 - 4343137
Alignment:
| Q |
17 |
caggagcttccttgcaaatattagggaagatgggg-gaaaattgctggacaagtgggtttacaagaacaacttttatttgatatctgtaaagaaagaaca |
115 |
Q |
| |
|
||||||||| ||||||||||||||||| | | ||| | || || | ||||||||| |||||||||||||||| | |||||| | ||||||| ||| |
|
|
| T |
4342874 |
caggagctttcttgcaaatattagggaggtttgggagcaagtttcaggacaagtgtatttacaagaacaacttatgcatgatattttcaaagaaacaact |
4342973 |
T |
|
| Q |
116 |
atcaaaataccaaacattgagtcgggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggcc |
215 |
Q |
| |
|
| ||| |||| ||||||||| | || |||| | ||||||||| | || || ||| ||||||| ||| |||||||||| ||||||| || | | | | |
|
|
| T |
4342974 |
accaagatacaaaacattgaattggaaaaacctatattaaaggaaaggctctgtcataaaagagttcttcttgtacttgacgatgtgaataaattggatc |
4343073 |
T |
|
| Q |
216 |
aactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaac |
279 |
Q |
| |
|
|||| ||| |||| |||||||||||| |||||||| | |||||| ||||||||||||||| |
|
|
| T |
4343074 |
aactaaatgctttgtgtggaagtcgtagatggtttgctccagggagtagaataatcatcacaac |
4343137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 151 - 368
Target Start/End: Original strand, 4358477 - 4358697
Alignment:
| Q |
151 |
attaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggttt |
250 |
Q |
| |
|
||||||||| | ||| || ||| |||||||||||||||||||||| ||||| | || | | | |||||| ||| |||| ||||||||| || |||||||| |
|
|
| T |
4358477 |
attaaaggaaagactgtgtcataaaagagtacttattgtacttgacgatgtcaataaattggaccaactaaatgctttgtgtggaagttgtaaatggttt |
4358576 |
T |
|
| Q |
251 |
ggctctgggagtgtaataatcatcacaactagagatttggatttactttcaggta---gagttgataaaatttacaaaatgacaacaatgaatgaaagag |
347 |
Q |
| |
|
| | || ||| ||| |||||||||||||| ||| | || ||||| ||| | |||||||||||| |||| ||||| | |||| ||||||| | |
|
|
| T |
4358577 |
gctccaggaagtagaattatcatcacaactagggataagcatatacttagagggaaacaagttgataaaatatacataatgaaagaaatggatgaaagtg |
4358676 |
T |
|
| Q |
348 |
aatcaattgagctttttagtt |
368 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
4358677 |
aatctcttgagctttttagtt |
4358697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 292
Target Start/End: Original strand, 6750920 - 6751033
Alignment:
| Q |
179 |
gtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaa |
278 |
Q |
| |
|
|||||| |||| ||||||||||||| | | | | |||||| || |||| |||||||| |||||||||||||| | |||||| |||||||||||||| |
|
|
| T |
6750920 |
gtacttcttgtgcttgatgatgtgaatgaattggaccaactaaaagctttgtgtggaagccgtgaatggtttggtccagggagtagaataatcatcacaa |
6751019 |
T |
|
| Q |
279 |
ctagagatttggat |
292 |
Q |
| |
|
| ||| || ||||| |
|
|
| T |
6751020 |
caagaaatatggat |
6751033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 6713879 - 6713991
Alignment:
| Q |
174 |
aaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcat |
273 |
Q |
| |
|
|||| |||||| |||| ||||||||||||| || ||| | |||||| || |||| |||||||| || |||||||||| | |||||| | ||||||| |
|
|
| T |
6713879 |
aaagggtacttcttgtgcttgatgatgtgaataaactggaccaactaaaggctttgtgtggaagccgcaaatggtttggtccggggagtagagtaatcat |
6713978 |
T |
|
| Q |
274 |
cacaactagagat |
286 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
6713979 |
cacaacaagagat |
6713991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 6834282 - 6834354
Alignment:
| Q |
214 |
ccaactgaatactttatgtggaagtcgtgaatggtttggctctgggagtgtaataatcatcacaactagagat |
286 |
Q |
| |
|
|||||| ||| |||| ||||||||||| ||||||||||| || || ||| |||||||||||| || |||||| |
|
|
| T |
6834282 |
ccaactaaatgctttgtgtggaagtcgcgaatggtttggttccggaagtagaataatcatcacgacaagagat |
6834354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 139 - 279
Target Start/End: Complemental strand, 10614 - 10475
Alignment:
| Q |
139 |
gggaaaaatcacattaaaggatatactttgccatgaaagagtacttattgtacttgatgatgtgagtacactaggccaactgaatactttatgtggaagt |
238 |
Q |
| |
|
||||||||| ||| |||||||||| || ||| || | ||||||||| |||| |||||||||||| || | | |||||| ||| |||| ||||||||| |
|
|
| T |
10614 |
gggaaaaat-acaataaaggatatgctctgcaataagagagtacttcttgttcttgatgatgtggatagtttggaccaactaaatgctttgtgtggaagt |
10516 |
T |
|
| Q |
239 |
cgtgaatggtttggctctgggagtgtaataatcatcacaac |
279 |
Q |
| |
|
|||||||||||||| || |||| | ||||||||| ||||| |
|
|
| T |
10515 |
cgtgaatggtttggttcagggactagaataatcattacaac |
10475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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