View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13540_low_9 (Length: 310)
Name: NF13540_low_9
Description: NF13540
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13540_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 24 - 296
Target Start/End: Original strand, 7755807 - 7756078
Alignment:
| Q |
24 |
ggtcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatc |
123 |
Q |
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| T |
7755807 |
ggtcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatc |
7755906 |
T |
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| Q |
124 |
gtgagtgaaatcttcgtagtgatttgccattgatgaagattatggtgaagttttaattttgagttttgaggtttatgtgtaaaattgtagaatggtttaa |
223 |
Q |
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| T |
7755907 |
gtgagtgaaatcttcgtagtgatttgccattgatgaagattatggtgaag-tttaattttgagttttgaggtttatgtgtaaaattgtagaatggtttaa |
7756005 |
T |
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| Q |
224 |
gttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatg |
296 |
Q |
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| T |
7756006 |
gttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatg |
7756078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 7839938 - 7840050
Alignment:
| Q |
28 |
gtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgtga |
127 |
Q |
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| T |
7839938 |
gtctctgaagacgttgattccgtgacggagaagtgaacggtagagatgatcggtgaaggagtagcgagttctgcctctgaaactgaggaaaacgtcgtga |
7840037 |
T |
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| Q |
128 |
gtgaaatcttcgt |
140 |
Q |
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| T |
7840038 |
gtgaagtcttcgt |
7840050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 26 - 159
Target Start/End: Original strand, 7763265 - 7763398
Alignment:
| Q |
26 |
tcgtctctgaaaacgttgattccttgacggagaagtgaacggtagagatgatcggtgaaagagtagcgtgttccgcctctgaaactcagaaaaacatcgt |
125 |
Q |
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| T |
7763265 |
tcgtctctgaagacgttgattccatgacggagaagagagtgatagagatgatccgtgaaggagtagcgagttccgcctctgaaactcagaaatatgtcgt |
7763364 |
T |
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| Q |
126 |
gagtgaaatcttcgtagtgatttgccattgatga |
159 |
Q |
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| T |
7763365 |
gtgtgaaataatcattgtgattcgccattgatga |
7763398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 218 - 296
Target Start/End: Original strand, 7840117 - 7840195
Alignment:
| Q |
218 |
gtttaagttttaaatgaagtgtggagcttcaaaagtcagaagaatgcgggattacaaagaaacggtctacatgatgatg |
296 |
Q |
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| T |
7840117 |
gtttgagttttaaatcaagtgtggagcttcaaaagtcagaagaaagcgggatcacaatgaaccggtctacatgatgatg |
7840195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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