View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_10 (Length: 353)
Name: NF13541_high_10
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 45240170 - 45239835
Alignment:
| Q |
8 |
tcatatatggttcaacttctttagcaatttattacttgaaaatgaatatgtaatgtgataagcta-ggactaaatggtgcagattttagatgtaactaaa |
106 |
Q |
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| T |
45240170 |
tcatatatggttcaacttctttagcaatttattacttgaaaatgaatatgtaatgtgataagctaaggactaaatggtgcagattttagatgtaactaaa |
45240071 |
T |
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| Q |
107 |
atagttgtatgattttgctgtgatttctgattaatagtatcatctactttctttcagttgaagggaatcaatttatttacaaagctgcttcagagttagg |
206 |
Q |
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| T |
45240070 |
atagttgtatgattttgttgtgatttctgattaatagtatcatctactttctttcagttgaagggaatcaatttatttacaaagctgcttcagagttagg |
45239971 |
T |
|
| Q |
207 |
ctaatatgatcttaactattatgatcttaaccaatatttttctcatcaataatttcaattttatacattatagtgaactttcatctaaaactaaaagagt |
306 |
Q |
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| T |
45239970 |
ctaatatgatcttaactattatgatcttaaccaatatttttctcatcaataatttgaatttgatacattatagcgaactttcatctaaaactaaaagagt |
45239871 |
T |
|
| Q |
307 |
gctaaaatcatcaactaaatcgtattcatatctctg |
342 |
Q |
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| T |
45239870 |
gctaaaatcatcaactaaatcgtattcatatctctg |
45239835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 8 - 196
Target Start/End: Complemental strand, 45232902 - 45232710
Alignment:
| Q |
8 |
tcatatatggttcaacttctttagcaatttattacttgaaaatgaatatgtaatgtgataa-------gcta-ggactaaatggtgcagattttagatgt |
99 |
Q |
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| T |
45232902 |
tcatatatgattcaacttctttagcaattcattacttgaaaacgaatatgtaatgcgacaaccgacaagctaaggactaaatggtgcagattttagatgt |
45232803 |
T |
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| Q |
100 |
aactaaaatagttgtatgattttgctgtgatttctgattaatagtatcatctactttctttcagttgaagggaatcaatttatttacaaagctgctt |
196 |
Q |
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| T |
45232802 |
atg----attctagcatgatcttgctgtgatgtctgattaatagtaccatctactttctttctgttgaagggaatcaattcatttacaaagctgctt |
45232710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 7832798 - 7832687
Alignment:
| Q |
226 |
tatgatcttaaccaatatttttctcatcaataatttcaattttatacattatagtgaactttcatctaaaactaaaagagtg-ctaaaatcatcaactaa |
324 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
7832798 |
tatgattttaaccaatatttttctcatcaataattttaatttgatacattacagtgaactttcatct------aaaagagtgactaaaatcatcaactaa |
7832705 |
T |
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| Q |
325 |
atcgtattcatatctctg |
342 |
Q |
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| T |
7832704 |
atcgtattcatatctctg |
7832687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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