View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_15 (Length: 322)
Name: NF13541_high_15
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_15 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 1653424 - 1653733
Alignment:
| Q |
13 |
cagaacaagaaggtttgtcagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagactatggtggcg |
112 |
Q |
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| T |
1653424 |
cagaacaagaaggtttgtcagttcaacatattgtttttggcatagctggatcatctcagctttggaaacggaggaaggaatatattagactatggtggcg |
1653523 |
T |
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| Q |
113 |
tcccaatgacatgcgtggccatgtctggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctggagacatttcg |
212 |
Q |
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| T |
1653524 |
tcccaatgacatgcgtggccatgtgtggttagaggaaaaagtggttgaagaacatggagatgagttattaccccctaccatgatttctggagacatttcg |
1653623 |
T |
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| Q |
213 |
tacttccgttacactaatcccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagatgtgcgttggt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1653624 |
tacttccgttacactaatcccataggtcacccttctggcctccggatttctcgcattatcaaagaaagctttcgccttggtctctcagatgtgcgttggt |
1653723 |
T |
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| Q |
313 |
ttgttctatg |
322 |
Q |
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| T |
1653724 |
ttgtcctatg |
1653733 |
T |
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