View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_16 (Length: 321)
Name: NF13541_high_16
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_16 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 40 - 321
Target Start/End: Complemental strand, 19443960 - 19443679
Alignment:
| Q |
40 |
ctaaaatatagtgattttaggagatttagtgaaggaaattgaggtattatggaggtgatcaattttctaattacaaattaccaaagtagatattttacta |
139 |
Q |
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| T |
19443960 |
ctaaaatagagttattttaggagatttagtgaagacaatagaggtattatggaggtaatctgttttgttattacaaattacggaagtagatatttaacta |
19443861 |
T |
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| Q |
140 |
caattgattgggctaaagccgacttagttttcatggaggtatcccacgacctccagttttgctattaatgccacctctacaatctcctaaatctctcaaa |
239 |
Q |
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| T |
19443860 |
caattgattgggctaaagctgacttagttttcatggaggtatcccacgacctccaattttgctattaatgtcacctctacaatatactaaatctctcaaa |
19443761 |
T |
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| Q |
240 |
tattttcaaccttctttaccttcattttcttcacctccaccttgtgtaactctttcaccaccatttcctcctgatccaaaac |
321 |
Q |
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| T |
19443760 |
tatttttaaccttttttaccttcattttcttcacctccaccatgtgtaactctttcaccaccatttcctcctgatcccaaac |
19443679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 146 - 309
Target Start/End: Complemental strand, 19426138 - 19425975
Alignment:
| Q |
146 |
attgggctaaagccgacttagttttcatggaggtatcccacgacctccagttttgctattaatgccacctctacaatctcctaaatctctcaaatatttt |
245 |
Q |
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| T |
19426138 |
attgggctaaagccgacttagtattcatggaggtctcccacaacctctagttttgttattactgccacctctacaatctcctaaatctctcaaatattat |
19426039 |
T |
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| Q |
246 |
caaccttctttaccttcattttcttcacctccaccttgtgtaactctttcaccaccatttcctc |
309 |
Q |
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| T |
19426038 |
caactttctttaccttcattttcttcacctccaccttgtgtaactccttcaccaccatttcctc |
19425975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 43 - 162
Target Start/End: Complemental strand, 19426268 - 19426156
Alignment:
| Q |
43 |
aaatatagtgattttaggagatttagtgaaggaaattgaggtattatggaggtgatcaattttctaattacaaattaccaaagtagatattttactacaa |
142 |
Q |
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| T |
19426268 |
aaatatagtgattttaggagttttagtgaaggcaattgaggtattatggaggtaataaattttct-------tattacggaagtagatattttactacaa |
19426176 |
T |
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| Q |
143 |
ttgattgggctaaagccgac |
162 |
Q |
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| T |
19426175 |
ttgattgggctaaagacgac |
19426156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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