View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13541_high_17 (Length: 314)

Name: NF13541_high_17
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13541_high_17
NF13541_high_17
[»] chr8 (2 HSPs)
chr8 (1-303)||(28215823-28216125)
chr8 (1-224)||(26535505-26535726)
[»] scaffold0005 (1 HSPs)
scaffold0005 (41-301)||(239263-239522)
[»] chr4 (2 HSPs)
chr4 (41-301)||(14577853-14578112)
chr4 (1-184)||(21046662-21046844)
[»] chr7 (1 HSPs)
chr7 (1-294)||(29284575-29284867)
[»] chr5 (2 HSPs)
chr5 (41-301)||(17462136-17462395)
chr5 (4-167)||(42265981-42266144)
[»] chr3 (2 HSPs)
chr3 (1-184)||(12783856-12784039)
chr3 (94-143)||(1486387-1486436)
[»] chr2 (1 HSPs)
chr2 (54-184)||(9752576-9752706)
[»] chr6 (1 HSPs)
chr6 (89-222)||(29817320-29817453)


Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 28215823 - 28216125
Alignment:
Q  1 gaaccaacaactccgtgcagtgaggcagcaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcag 100  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215823 gaaccaacaactccctgcagtgaggcaacaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcag 28215922  T
Q  101 tctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28215923 tctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatc 28216022  T
Q  201 tgagaaatcaaaggcatgaccacacatcatataccaataagcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaa 300  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28216023 tgagaaatcaaaggcatgaccacacatcaaataccaataagcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatttaaaacatcggagaa 28216122  T
Q  301 taa 303  Q
    |||    
T  28216123 taa 28216125  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26535726 - 26535505
Alignment:
Q  1 gaaccaacaactccgtgcagtgaggcagcaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcag 100  Q
    |||||||||||||| ||||  |||||| ||| || ||  ||||| |||   |||||||||| |||||||||||||||||||||| |||||||||||||||    
T  26535726 gaaccaacaactccctgcaacgaggcaacaagcaacagagactcattcaggtccaattagtccaatgtcaatcatacgaatgacgaggattccaaagcag 26535627  T
Q  101 tctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatc 200  Q
    ||||||||||||||||| |||||||||| |||||  || | ||||||||| ||||||||||| ||||||||||| |||||||||| ||   || ||||||    
T  26535626 tctgaagtcagccacaatgactgcgacatatatt--aaaagcatcgatgcatcaccatatctctgaaacctgcataactcaacagctctgaatcataatc 26535529  T
Q  201 tgagaaatcaaaggcatgaccaca 224  Q
       |||||||||| ||||||||||    
T  26535528 aacgaaatcaaagacatgaccaca 26535505  T

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Target: scaffold0005 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 41 - 301
Target Start/End: Complemental strand, 239522 - 239263
Alignment:
Q  41 actctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaaca 140  Q
    |||||||||| | |||||||| |||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||| || ||||||||||||||||    
T  239522 actctttcgagtgcaattagtccaatatcaatcatacgaatgactaggatttcaaagcattctgaagtcagccacaaggattgtgacagatattcaaaca 239423  T
Q  141 acatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccacacatcatataccaataa 240  Q
     |||||| |||||||||||||||||| || || |||||||||||| ||   ||||||||  |||||||||||| |||||||||||  || ||| ||||||    
T  239422 ccatcgacgcgtcaccatatctttgatacttg-agaactcaacagctctagataataataagagaaatcaaagacatgaccacacgacaaataacaataa 239324  T
Q  241 gcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaat 301  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  239323 gcaaaattaaccaaaacaatcctaaagctttaaaagagtcaaatctaaaacatcagagaat 239263  T

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Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 41 - 301
Target Start/End: Original strand, 14577853 - 14578112
Alignment:
Q  41 actctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaaca 140  Q
    |||||||||| | |||||||| |||| ||||||||||||||||| |||||| ||||||| |||||||||||||||||||| || ||||||||||||||||    
T  14577853 actctttcgagtgcaattagtccaatatcaatcatacgaatgactaggatttcaaagcattctgaagtcagccacaaggattgtgacagatattcaaaca 14577952  T
Q  141 acatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccacacatcatataccaataa 240  Q
     |||||| |||||||||||||||||| || || |||||||||||| ||   ||||||||  |||||||||||| |||||||||||  || ||| ||||||    
T  14577953 ccatcgacgcgtcaccatatctttgatacttg-agaactcaacagctctagataataataagagaaatcaaagacatgaccacacgacaaataacaataa 14578051  T
Q  241 gcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaat 301  Q
    |||||||||||||||| || |||||||||||||||||||||||||||||||||| ||||||    
T  14578052 gcaaaattaaccaaaacaatcctaaagctttaaaagagtcaaatctaaaacatcagagaat 14578112  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 21046844 - 21046662
Alignment:
Q  1 gaaccaacaactccgtgcagtgaggcagcaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcag 100  Q
    |||||||||||||| |||||  ||||| ||| || || | |||||||| | |||||||||| |||||||||| ||||||||||| ||||||||||| |||    
T  21046844 gaaccaacaactccatgcagcaaggcaacaagca-caccaactctttcaagtccaattagtccaatgtcaattatacgaatgactaggattccaaaacag 21046746  T
Q  101 tctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaaca 184  Q
    ||||||||||| |||||  ||||||||| ||||||||| | |||||| | ||||||||||||||||||||||||||||||||||    
T  21046745 tctgaagtcagtcacaacaactgcgacaaatattcaaatagcatcgacgtgtcaccatatctttgaaacctgcagaactcaaca 21046662  T

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Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 29284867 - 29284575
Alignment:
Q  1 gaaccaacaactccgtgcagtgaggcagcaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcag 100  Q
    |||||||||||||| ||||| |||||| ||| || || |||||| || || |||||||||| |||||| |||||||||| | || || ||| ||||||||    
T  29284867 gaaccaacaactccctgcagcgaggcaacaagcaaca-cgactcatttgagtccaattagtccaatgttaatcatacgacttactagaatttcaaagcag 29284769  T
Q  101 tctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatc 200  Q
    || ||||||| ||||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||| |  ||   ||||||||     
T  29284768 tccgaagtcaaccacaagtactgcgacaaatattcaaacaacatcgacacgtcaccatatctttgaaacctgcagaacgcaagaactctggataataata 29284669  T
Q  201 tgagaaatcaaaggcatgaccacacatcatataccaataagcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatc 294  Q
    ||||||||||||||||||||| |||  || |||||||| || |||||||||||||| |||||||||||||||||| ||||||||  ||||||||    
T  29284668 tgagaaatcaaaggcatgaccccacgacaaataccaattagaaaaattaaccaaaacaaccctaaagctttaaaaaagtcaaataaaaaacatc 29284575  T

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Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 41 - 301
Target Start/End: Complemental strand, 17462395 - 17462136
Alignment:
Q  41 actctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaaca 140  Q
    ||||||| || |||||||||| ||||||||||||||| |||||  | |||||||| |||||||||||| ||||||||||||||| ||| |||||||||||    
T  17462395 actcttttgagtccaattagtccaatgtcaatcatacaaatgattaagattccaa-gcagtctgaagttagccacaaggactgcaacaaatattcaaaca 17462297  T
Q  141 acatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttccttataataatctgagaaatcaaaggcatgaccacacatcatataccaataa 240  Q
    ||||| | ||||||||||||||| ||||||||||||||||||||  ||   ||||| ||| ||||||| ||||| ||||||||||  ||  |||||||||    
T  17462296 acatcaacgcgtcaccatatcttggaaacctgcagaactcaacaactctggataatgatcagagaaattaaaggtatgaccacacgacaactaccaataa 17462197  T
Q  241 gcaaaattaaccaaaataaccctaaagctttaaaagagtcaaatctaaaacatcggagaat 301  Q
    ||||||||||| |||| |||| |||| | |||||||  | |||||||||||||| ||||||    
T  17462196 gcaaaattaacaaaaacaaccataaatccttaaaaggttaaaatctaaaacatcagagaat 17462136  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 4 - 167
Target Start/End: Original strand, 42265981 - 42266144
Alignment:
Q  4 ccaacaactccgtgcagtgaggcagcaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtct 103  Q
    ||||||||||| |||||  ||||| ||| || ||  ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  42265981 ccaacaactccttgcagcaaggcaacaagcaacagagactctttcgagtccaattagtccaatgtcaatcatacgaatgactaggattccaaagcagtct 42266080  T
Q  104 gaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaa 167  Q
    ||| ||||||||||||||| |||||||||||||||||||||||| || ||||| ||| ||||||    
T  42266081 gaaatcagccacaaggactacgacagatattcaaacaacatcgacgcatcaccttatttttgaa 42266144  T

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Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 12783856 - 12784039
Alignment:
Q  1 gaaccaacaactccgtgcagtgaggcagcaatcatcatcgactctttcgaatccaattagttcaatgtcaatcatacgaatgaccaggattccaaagcag 100  Q
    |||||||||||||| ||||| |||||| ||| || ||  ||||| ||||   ||||||||| ||||| |||||||||||||||| |||||| | |||||     
T  12783856 gaaccaacaactccctgcagcgaggcaacaagcaacacggactccttcggggccaattagtccaatgccaatcatacgaatgacgaggatttctaagcat 12783955  T
Q  101 tctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaaca 184  Q
    ||||||||||||||||| |||||||||| ||||||||||| |||| | |||||||||||||| ||||||||||| |||||||||    
T  12783956 tctgaagtcagccacaatgactgcgacatatattcaaacagcatcaacgcgtcaccatatctctgaaacctgcataactcaaca 12784039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 1486436 - 1486387
Alignment:
Q  94 aaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaaca 143  Q
    ||||||||||||||| || |||||||| || |||| ||||||||||||||    
T  1486436 aaagcagtctgaagttagtcacaaggattgagacaaatattcaaacaaca 1486387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 184
Target Start/End: Original strand, 9752576 - 9752706
Alignment:
Q  54 caattagttcaatgtcaatcatacgaatgaccaggattccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtc 153  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||| | |||| ||| ||||||||| | |||||| |||||    
T  9752576 caattagtccaatgacaatcataagaatgacaaggattccaaagcaatctgaagtcagccacaacgtctgccacaaatattcaaatagcatcgacgcgtc 9752675  T
Q  154 accatatctttgaaacctgcagaactcaaca 184  Q
    ||| ||||| |||||||||||||||||||||    
T  9752676 accttatctctgaaacctgcagaactcaaca 9752706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 222
Target Start/End: Original strand, 29817320 - 29817453
Alignment:
Q  89 attccaaagcagtctgaagtcagccacaaggactgcgacagatattcaaacaacatcgatgcgtcaccatatctttgaaacctgcagaactcaacagttc 188  Q
    |||||||||||||| |||||||  ||||| ||  | ||  ||||||||||||||||||||| ||||||||||||||| ||| |||| ||||||||   ||    
T  29817320 attccaaagcagtcagaagtcaatcacaatgatcgtgatggatattcaaacaacatcgatgtgtcaccatatctttggaacatgcataactcaacgactc 29817419  T
Q  189 cttataataatctgagaaatcaaaggcatgacca 222  Q
     | ||||||||| |||||||||||||||||||||    
T  29817420 ttgataataatcagagaaatcaaaggcatgacca 29817453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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