View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_4 (Length: 494)
Name: NF13541_high_4
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 7760999 - 7761482
Alignment:
| Q |
1 |
actctatcgaacaagagttagggcgggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaatgtcaaataagctaaattcttcagagta |
100 |
Q |
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| T |
7760999 |
actctatcgaacaagagttagggcgggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaatgtcaaataagctaaattcttcagagta |
7761098 |
T |
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| Q |
101 |
tactataggtaccagtcatgatatgacaaggaatgaatatagacgaaccaacaaatacaaagatggagtgcttttaagcaaaaatcaaacttattttcaa |
200 |
Q |
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| T |
7761099 |
tactataggtaccagtcatgatatgacaaggaatgaatatagacgaaccaacaaatacaaagatggagtgcttttaagcaaaaatcaaacttattttcaa |
7761198 |
T |
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| Q |
201 |
accaaaacaaataatactcaaatgtaaattaggccgatattgatatagctataaaacccctaatctttaatttatgcaatcaagaatgaaacccaatctg |
300 |
Q |
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| T |
7761199 |
accaaaacaaataatactcaaatgtaaattaggccgatattgatatagctataaaacccctaatctttaatttatgcaatcaagaatgaaacccaatctg |
7761298 |
T |
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| Q |
301 |
aaaataattagtcaaataaaagtaaaactatgtatatctgcaactgatttatgccaattatctatttgctattgaaggcttcagcttccaaataatcctg |
400 |
Q |
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| T |
7761299 |
aaaataattagtcaaataaaagtaaaactatgtatatctgcaactgatttatgccaattatctatttgctattgaaggcttcagcttccaaataatcctg |
7761398 |
T |
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| Q |
401 |
caaatagaagtaaaatgtataaaatcaaatgatataatgaatattccttagtttagctttggtttgctgttctccgactccatg |
484 |
Q |
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| T |
7761399 |
caaatagaagtaaaatgtataaaatcaaatgatataatgaatattccttagtttagctttggtttgctgttctccgactccatg |
7761482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 72
Target Start/End: Original strand, 7815791 - 7815838
Alignment:
| Q |
25 |
gggaagaatggttattcacgtcacaagaaattaaatcacaatgcacaa |
72 |
Q |
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| T |
7815791 |
gggaagaatgcttattcacgcgacaagaaattaaatcacaatgcacaa |
7815838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 7815961 - 7816019
Alignment:
| Q |
181 |
aaaatcaaacttattttcaaaccaaaacaaataatactcaaatgtaaattaggccgata |
239 |
Q |
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| T |
7815961 |
aaaatcaaactcatttttaaaccaaaacaaataatgttcaaatgataattaggctgata |
7816019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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