View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_6 (Length: 420)
Name: NF13541_high_6
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 35 - 420
Target Start/End: Original strand, 47116736 - 47117118
Alignment:
| Q |
35 |
aatgaacgaatccccaatccttccacaatagatggacaccactgca-gccacatcatacacatgttatttcatttccttatgatatctcnnnnnnnctga |
133 |
Q |
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| T |
47116736 |
aatgaacgaatccccaatccttccacaatagatggacaccactccaagcttcctcatacccttgttatttcatttccttatgatatctctttttttctga |
47116835 |
T |
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| Q |
134 |
cattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaag |
233 |
Q |
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| T |
47116836 |
cattgttttgtttcatcgcttctcaggtaattacaatagttatattttatcaaagatattcaataaccaatttcttttatatctttagtttcaattcaag |
47116935 |
T |
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| Q |
234 |
gagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacgtatcaatgactcgatcgatcaccttttaacgattattttt |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
47116936 |
gagataaatattcataccttttaacgatcaaatcacaaagcaaggtaagcaatatcaacgtatcaatgac----tcgatcaccttttaacgattattttt |
47117031 |
T |
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| Q |
334 |
aatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccatcttcgccgg |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
47117032 |
aatttcttgttttgtagatggataggcggagaatgtatgataggcaacaaagctcaacgggaacgccaacatcaccgtcttcaccgg |
47117118 |
T |
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