View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_7 (Length: 385)
Name: NF13541_high_7
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 26833130 - 26833367
Alignment:
| Q |
1 |
aaaaaccgatataaatgactgaagtgtctaacaagtaacaagagaaccgaaatggaagnnnnnnnnttaaggtgacaaaagttctcattagttttgtagc |
100 |
Q |
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| T |
26833130 |
aaaaaccgatataaatgactgaagtgtctaacaagtaacaagagaaccaaaatggaagaaaaaaaattaaggtgacaaaagttctcattagttttgtagc |
26833229 |
T |
|
| Q |
101 |
atagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833230 |
atagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataact |
26833329 |
T |
|
| Q |
201 |
gataaacctgcattttgaacaatttatatgtcaatttc |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26833330 |
gataaacctgcattttgaacaatttatatgtcaatttc |
26833367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 91 - 229
Target Start/End: Original strand, 26786432 - 26786570
Alignment:
| Q |
91 |
gttttgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcacca |
190 |
Q |
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||||||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||| |
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| T |
26786432 |
gttttgtagcatatataccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcacca |
26786531 |
T |
|
| Q |
191 |
attgataactgataaacctgcattttgaacaatttatat |
229 |
Q |
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||||||| ||||||||||| ||||| |||| || ||||| |
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| T |
26786532 |
attgatagctgataaacctacatttagaaccatatatat |
26786570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 95 - 222
Target Start/End: Original strand, 26823309 - 26823436
Alignment:
| Q |
95 |
tgtagcatagataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattg |
194 |
Q |
| |
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|||||||| ||||||| ||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||| |
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| T |
26823309 |
tgtagcatgtataccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattg |
26823408 |
T |
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| Q |
195 |
ataactgataaacctgcattttgaacaa |
222 |
Q |
| |
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|||||||||||||||||| | ||||||| |
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| T |
26823409 |
ataactgataaacctgcaatatgaacaa |
26823436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 105 - 222
Target Start/End: Original strand, 26799228 - 26799345
Alignment:
| Q |
105 |
ataccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgata |
204 |
Q |
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||||||| || || || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||| |||||| |
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| T |
26799228 |
ataccttgatggttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgata |
26799327 |
T |
|
| Q |
205 |
aacctgcattttgaacaa |
222 |
Q |
| |
|
|||||||| ||||||||| |
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|
| T |
26799328 |
aacctgcaatttgaacaa |
26799345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 26833438 - 26833485
Alignment:
| Q |
309 |
tcacctctctttcattatacattggaacttgaacaagaaccatagggt |
356 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26833438 |
tcacctctctttcattatacattggaacttgaacaagaaccatagggt |
26833485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 309 - 351
Target Start/End: Original strand, 26799425 - 26799467
Alignment:
| Q |
309 |
tcacctctctttcattatacattggaacttgaacaagaaccat |
351 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
26799425 |
tcacctctctttcattgtacattggaacttgaacaagaaccat |
26799467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 209
Target Start/End: Complemental strand, 41546059 - 41545969
Alignment:
| Q |
119 |
ggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgataaacct |
209 |
Q |
| |
|
||||| ||||| |||||||||| ||| || || || |||||||| |||||||| | ||||||||||| ||||||||||| ||||| |||| |
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| T |
41546059 |
ggatctgttgagtcatcaagaacttgaataataattctatcagatggccatgataacccacatgcagctccaattgataattgatacacct |
41545969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 26786649 - 26786696
Alignment:
| Q |
309 |
tcacctctctttcattatacattggaacttgaacaagaaccatagggt |
356 |
Q |
| |
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|||||||||||||||| |||||||| | |||||||||||| ||||||| |
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| T |
26786649 |
tcacctctctttcattgtacattgggatttgaacaagaacaatagggt |
26786696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 106 - 209
Target Start/End: Complemental strand, 41917095 - 41916992
Alignment:
| Q |
106 |
taccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgataa |
205 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| |||||||| || |||||| |
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| T |
41917095 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
41916996 |
T |
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| Q |
206 |
acct |
209 |
Q |
| |
|
|||| |
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|
| T |
41916995 |
acct |
41916992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 311 - 354
Target Start/End: Complemental strand, 2021679 - 2021636
Alignment:
| Q |
311 |
acctctctttcattatacattggaacttgaacaagaaccatagg |
354 |
Q |
| |
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||||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
2021679 |
acctctctttcattacacattggaatctgaacaagaaccatagg |
2021636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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