View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13541_high_9 (Length: 355)
Name: NF13541_high_9
Description: NF13541
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13541_high_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 8 - 355
Target Start/End: Complemental strand, 30373087 - 30372740
Alignment:
| Q |
8 |
aagcatagggaacagatgctagatgatgcatataataaatatatgtttgatgaccagggattgcccaagtggtttctcgatgaggaaagaaaacaccgtg |
107 |
Q |
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| T |
30373087 |
aagcaaagggaacagatgctagatgatgcatataataaatacatgtttgatgaccagggattgcccaagtggtttctcgatgaggaaagaaaacaccgtg |
30372988 |
T |
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| Q |
108 |
taccagttaagcctgtcacgaaagaggaagttgctgctatgaaagcacaatttaaagcaattgatactagacctgcaaagaaggtggctgaggccaaagc |
207 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30372987 |
taccagttaagcctgtcacaaaagaggaagttgctgctatgaaggcacaatttaaagcaattgatactagacctgcaaagaaggtggctgaggccaaagc |
30372888 |
T |
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| Q |
208 |
acgaaagaagcgtgttgcaatgaggaagattgagaaagtccgcaagaaggccaatgctatatcagatcagccagacatatctgatcgttccaagagtaag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30372887 |
acgaaagaagcgtgttgcaatgaggaagattgagaaagtccgcaagaaggccaacgctatatcagatcagccagacatatctgatcgttccaagagtaag |
30372788 |
T |
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| Q |
308 |
caaattgaccgactctataaaaacgcagttccaaaaaggcctcaaaag |
355 |
Q |
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| T |
30372787 |
caaattgaccgactctataaaaacgcagttccaaaaaggcctcaaaag |
30372740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 351
Target Start/End: Complemental strand, 26516626 - 26516284
Alignment:
| Q |
8 |
aagcatagggaacagatgctagatgatgcatataataaatatatgtttgatgaccagggattgcccaagtggtttctcgatgaggaaagaaaacaccgtg |
107 |
Q |
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||||| |||||| | ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |
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| T |
26516626 |
aagcaaagggaatacatgctagatgatgcatataataagtatgtgtttgatgaccagggattgccgaagtggtttctcgatgaggaaaggaaacaccgtg |
26516527 |
T |
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| Q |
108 |
taccagttaagcctgtcacgaaagaggaagttgctgctatgaaagcacaatttaaagcaattgatactagacctgcaaagaaggtggctgaggccaaagc |
207 |
Q |
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|||||||||||||| ||||||||||| |||||||||| |||||||| |||| ||||| |||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
26516526 |
taccagttaagcctatcacgaaagagcaagttgctgcaatgaaagcccaatctaaagaaatt-atactcggcctgcaaagaaggtggctgaggccaaagc |
26516428 |
T |
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| Q |
208 |
acgaaagaagcgtgttgcaatgaggaagattgagaaagtccgcaagaaggccaatgctatatcagatcagccagacatatctgatcgttccaagagtaag |
307 |
Q |
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||| |||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| |
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| T |
26516427 |
acgcaagaagcgtgttgctatgaggaagattgagaaaatacgcaagaaggccaatgctatatcagatcagtcagacatatccgatcgttcaaagagtaag |
26516328 |
T |
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| Q |
308 |
caaattgaccgactctataaaaacgcagttccaaaaaggcctca |
351 |
Q |
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|||||||| ||||| |||||||| | ||||||||||||||||| |
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| T |
26516327 |
caaattgatcgactatataaaaaatctgttccaaaaaggcctca |
26516284 |
T |
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Back To:
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