View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13542_high_1 (Length: 526)
Name: NF13542_high_1
Description: NF13542
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13542_high_1 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 17 - 526
Target Start/End: Original strand, 131673 - 132182
Alignment:
| Q |
17 |
actactatatttgtgcaatgtgcattaatttcctcttttttcaattgatgacatctacctggttcagagaatttcgaaccacccattgaatttgttggct |
116 |
Q |
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| T |
131673 |
actactatatttgtgcaatgtgcattaatttcctcttttttcaattgatgacatctacctggttcagagaatttcgaaccacccattgaatttgttggct |
131772 |
T |
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| Q |
117 |
atctcagtaggagttaagcaaaaagaagttgttgataaaatcgtcaaaaaggtgacggttgcttcacttatataatttgactttgatctacagtttaaac |
216 |
Q |
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| T |
131773 |
atctcagtaggagttaagcaaaaagaagttgttgataaaatcgtcaaaaaggtgacggttgcttcacttatataatttgactttgatctacagtttaaac |
131872 |
T |
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| Q |
217 |
tcatatctgctgacttgtaccgctggtggcagttcccgtcaagtgattttgttgtgatgctttttcattatgatggctttgtggatggatggaagaattt |
316 |
Q |
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| T |
131873 |
tcatatctgctgacttgtaccgctggtggcagttcccgtcaagtgattttgttgtgatgctttttcattatgatggctttgtggatggatggaagaattt |
131972 |
T |
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| Q |
317 |
agcttggagtaatcgtgccatacatgtgtctgctataaatcaaacgaaatggtataataagctcatatgttaatttgttttccctctgcggtcatctact |
416 |
Q |
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| T |
131973 |
agcttggagtaatcgtgccatacatgtgtctgctataaatcaaacgaaatggtataataagctcatatgttaatttgttttccctctgcggtcatctact |
132072 |
T |
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| Q |
417 |
cctatatctgtaaatattaaacaaataaattctctctatcatgacataggtggtttgcaaaacgatttttgcatccagacatagttgctgactacaatta |
516 |
Q |
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| T |
132073 |
cctatatctgtaaatattaaacaaataaattctctctatcatgacataggtggtttgcaaaacgatttttgcatccagacatagttgctgactacaatta |
132172 |
T |
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| Q |
517 |
tatatttctc |
526 |
Q |
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| T |
132173 |
tatatttctc |
132182 |
T |
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